PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00056575001
Common NameGSBRNA2T00056575001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 452aa    MW: 50430.2 Da    PI: 7.179
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00056575001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.91.5e-12304350455
                          HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                          +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI ++q
  GSBRNA2T00056575001 304 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLADAITYITDMQ 350
                          799***********************66......***************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.6E-4047216IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.234300349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-17300366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.13E-14303354No hitNo description
PfamPF000104.0E-10304350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.6E-17304366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-14306355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MGQKFWDNQE DRAMVESTIG SEACDFFISS ASSLTKLLPP PPTDPNLQQG LRHVVEGSDW  60
DYAIFWLASN VNSSDGCVLI WGDGHCRVVK GNSVDEQDET KRRVLSKLHL SFVGSDLVKQ  120
GPLTDLDMFY LASLYFSFRC DSNKYGPAGT YVSGKPLWAA DLPSCLSYYR VRSFLARSAG  180
FKTVLSVPVN CGVVELGSLK LIPEDKSVIE MVKSVFGGSD FVKTKEAPKI FGRQLSLGGS  240
KPRSMSINFS PKMEDDSGFS LESYEVGGSN QVYGKDEAAL YLTDEQRPRK RGRKPANGRE  300
EALNHVEAER QRREKLNQRF YALRAVVPNI SKMDKASLLA DAITYITDMQ KKIRVYETEK  360
QVMKRRESNQ ITPAEVDYQQ RQDDAVVRIS CPLENHPVSK VMQVFKENEV MPHDANVAVT  420
EEGVVHTFTL RPQGGCTAEQ LKDKLLTSLA H*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A5e-26298381281Transcription factor MYC2
5gnj_B5e-26298381281Transcription factor MYC2
5gnj_E5e-26298381281Transcription factor MYC2
5gnj_F5e-26298381281Transcription factor MYC2
5gnj_G5e-26298381281Transcription factor MYC2
5gnj_I5e-26298381281Transcription factor MYC2
5gnj_M5e-26298381281Transcription factor MYC2
5gnj_N5e-26298381281Transcription factor MYC2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.172150.0root| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00056575001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By UV treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013688195.10.0transcription factor bHLH3-like
SwissprotO234870.0BH003_ARATH; Transcription factor bHLH3
TrEMBLA0A078HCG70.0A0A078HCG7_BRANA; BnaC01g21650D protein
STRINGBo1g054800.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66112741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Sasaki-Sekimoto Y,Saito H,Masuda S,Shirasu K,Ohta H
    Comprehensive analysis of protein interactions between JAZ proteins and bHLH transcription factors that negatively regulate jasmonate signaling.
    Plant Signal Behav, 2014. 9(1): p. e27639
    [PMID:24394987]
  3. Fonseca S, et al.
    bHLH003, bHLH013 and bHLH017 are new targets of JAZ repressors negatively regulating JA responses.
    PLoS ONE, 2014. 9(1): p. e86182
    [PMID:24465948]
  4. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]