PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00056888001
Common NameGSBRNA2T00056888001, LOC106430001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 147aa    MW: 16382.6 Da    PI: 5.7898
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00056888001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.73.1e-0638781055
                         HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                         + R d++ ++++ L++l+ +      +K + a++L +A++YI+ Lq
  GSBRNA2T00056888001 38 KERKDKVGERISALQQLVSPY-----GKTDTASVLLEAMQYIQFLQ 78
                         67889999***********99.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.6422877IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.6E-102887IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-43683IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-123691IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.34E-63882No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MEYSRDSAGM MMENKRNVYS LEEGSIKRHK SDLSFSSKER KDKVGERISA LQQLVSPYGK  60
TDTASVLLEA MQYIQFLQEQ VKVLSAPYLQ ATPITTHEEV EEYSLRSRGL CLVPMEYTVG  120
VAQTNGADIW APVKTPAFSL QSNSPI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.284890.0seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00056888001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013726229.11e-105transcription factor bHLH154
SwissprotQ7XJU14e-87BH154_ARATH; Transcription factor bHLH154
TrEMBLA0A078HCK61e-104A0A078HCK6_BRANA; BnaC04g12910D protein
TrEMBLA0A3P6CBJ31e-104A0A3P6CBJ3_BRAOL; Uncharacterized protein
STRINGBo4g049510.11e-104(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33162761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31730.12e-89bHLH family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]