PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00057270001
Common NameGSBRNA2T00057270001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 189aa    MW: 20462.4 Da    PI: 7.7579
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00057270001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26093.62.2e-294103195
               DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                          +C++C+vlr++C++dC ++p++     p++q++++ +++k++G++ +++l++a p++ r+ +++sl+ eA+ r+ +P+yG+vg+++++++
  GSBRNA2T00057270001   4 SCNGCRVLRKGCSDDCSIRPCLgwiksPEAQANATVFLAKFYGRAGLMNLINAGPDHLRPGIFRSLLHEACGRIVNPIYGSVGLLWSGNW 93 
                          6***************************************************************************************** PP

               DUF260  86 qleqlkaela 95 
                          ql+q++a  +
  GSBRNA2T00057270001  94 QLCQAAASHH 103
                          ****998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.1893109IPR004883Lateral organ boundaries, LOB
PfamPF031956.9E-244102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSDDCS IRPCLGWIKS PEAQANATVF LAKFYGRAGL MNLINAGPDH  60
LRPGIFRSLL HEACGRIVNP IYGSVGLLWS GNWQLCQAAA SHHSSLSHQS EVVVAPHEGE  120
SKETESNNSE VMTFSPPAVQ GSGEIKLDLT LGLEPVSRAD HVVPVKKRKM GVFSTWQEES  180
SCKTDLVL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.22821e-147seed| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00057270001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2088771e-144AY208877.1 Brassica napus seed specific protein Bn15D17A mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002887102.16e-71LOB domain-containing protein 40
SwissprotQ9ZW961e-69LBD40_ARATH; LOB domain-containing protein 40
TrEMBLA0A078H8911e-137A0A078H891_BRANA; BnaA01g32900D protein
STRINGAl_scaffold_0002_13372e-70(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84632639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.17e-67LOB domain-containing protein 41
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]