PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00057292001
Common NameGSBRNA2T00057292001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 499aa    MW: 55750.1 Da    PI: 4.8801
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00057292001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.85.9e-06148167626
                          -SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                          C+ff++ G C++G++C+ +Hg
  GSBRNA2T00057292001 148 CKFFLQ-GRCRFGSSCRLSHG 167
                          ******.*********98887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010316.089142169IPR000571Zinc finger, CCCH-type
SMARTSM003568.5E-5142168IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.09E-5143167IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-4147168IPR000571Zinc finger, CCCH-type
SMARTSM004431.6E-13306352IPR000467G-patch domain
PfamPF015852.5E-12308350IPR000467G-patch domain
PROSITE profilePS5017412.732308354IPR000467G-patch domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MASEEDKALE DLLDYQLKDQ RESLSAIEEA LASDPSNPDL LSVHEELVGA IKDAEEGLFQ  60
LKRARLLQEA DIVLHGLNNN AAAVKPERTD PASELELEPE RKDLDDGSKC RFRHIDGRWY  120
NGRIIGFEGS DSAKISFLTP TSESMMMCKF FLQGRCRFGS SCRLSHGVDV PISSLKNYEE  180
TEWKQSMVGS KIWAVSGSKY DVWRVGELES WDDKLQLGGV VFRDDGSSAK LGSDAMVLSE  240
YADDDGEDEE EEEEEEEDGS DSGSEEESVS SDYDEEFPQG IGILGTTDQR RGGVQNETAI  300
FAKWENHTRG IASKLMANMG YREGMGLGVS GQGRLDPIVA KVLPPKRSLD HALEHIKNGE  360
AKSEKPKKKR SRGGRRKREK KFAEAARAAK LEEESDLFSF INNHEKANGR ESVKKRQNIG  420
PVDRKALVAY EDEVKDLRFQ VKKLEEMVKR NKRDQSFSDA ATRRLKEVQK ALASTLAAQA  480
SASNAVESKE NEKKWLKF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1365380PKKKRSRGGRRKREKK
2374379RRKREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00057292001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013664043.10.0zinc finger CCCH domain-containing protein 22-like
SwissprotQ9SK490.0C3H22_ARATH; Zinc finger CCCH domain-containing protein 22
TrEMBLA0A078HD670.0A0A078HD67_BRANA; BnaA09g41200D protein
STRINGBra007830.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM94371016
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24830.10.0C3H family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]