PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00057299001
Common NameGSBRNA2T00057299001, LOC106368598
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 407aa    MW: 45319.5 Da    PI: 8.7989
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00057299001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.65e-2360154399
                          EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                   B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                           +l+++++l ++ l lpk+f++++ ++ke+ + ++l+d++ rsW + l ++k+s+++++++GW++F+++ng k+g f+vFkl+g +++++
  GSBRNA2T00057299001  60 VALVTASNLHKDALDLPKEFTSSNLLEKEC-RRIVLRDRWERSWAMDLAFNKSSDTFYIRQGWRSFCDENGKKAGSFFVFKLVG-NRETP 147
                          5688999999999***********888777.59**************************************************9.66668 PP

                          EEEEE-S CS
                   B3  93 vvkvfrk 99 
                          +++++++
  GSBRNA2T00057299001 148 LLSLCST 154
                          9999886 PP
2B369.83.8e-22181272699
                          ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                   B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                          + + ++++g l lp +f+++hg++k++   +tl d++g +W  +l+ + ++gr+ l+kGWk+F+ angLk+gD+++F+l+g++++ ++++
  GSBRNA2T00057299001 181 IEHASFRKGSLHLPLRFMKKHGLDKPR--LITLLDKDGTKWVANLRRESSGGRMRLGKGWKDFALANGLKVGDSFTFELVGKNNTPPMLS 268
                          567788999***************655..8***************88888888****************************999999999 PP

                          EE-S CS
                   B3  96 vfrk 99 
                          ++r+
  GSBRNA2T00057299001 269 LIRT 272
                          9886 PP
3B3543.1e-17312403599
                          -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..E CS
                   B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelv 93 
                          ++++d  + ++l+lp +f++++g+ k +  ++tl  ++g +W   l    k+g   l+ GWk+F++ang+k+g++++++ + + ++++ v
  GSBRNA2T00057299001 312 TLTPDDVRACQLILPSQFMKANGIYKLG--KITLLGKNGTRWLAFL--LSKDGLLALGCGWKDFCEANGVKTGESFTLECICEdNDTTHV 397
                          56788899999***********988655..8***************..999999*************************99777999999 PP

                          EEEE-S CS
                   B3  94 vkvfrk 99 
                          +k++++
  GSBRNA2T00057299001 398 FKFCSN 403
                          999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.9E-2350154IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.59E-2254156IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.53658154IPR003340B3 DNA binding domain
SMARTSM010194.4E-3059155IPR003340B3 DNA binding domain
CDDcd100171.11E-2059153No hitNo description
PfamPF023623.2E-2160154IPR003340B3 DNA binding domain
SuperFamilySSF1019361.02E-23174265IPR015300DNA-binding pseudobarrel domain
SMARTSM010196.0E-25176273IPR003340B3 DNA binding domain
PROSITE profilePS5086316.482176273IPR003340B3 DNA binding domain
CDDcd100171.10E-23178264No hitNo description
Gene3DG3DSA:2.40.330.104.7E-21178263IPR015300DNA-binding pseudobarrel domain
PfamPF023627.1E-21179272IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.8E-19301403IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.02E-19305403IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.3E-17308404IPR003340B3 DNA binding domain
PROSITE profilePS5086312.816308403IPR003340B3 DNA binding domain
PfamPF023624.3E-16310403IPR003340B3 DNA binding domain
CDDcd100178.72E-15312401No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MVLDLSDLEP VGCRQTRDLP APSCNNGQDE TELERNKKVK KNNPETEVDS SISSDHSSFV  60
ALVTASNLHK DALDLPKEFT SSNLLEKECR RIVLRDRWER SWAMDLAFNK SSDTFYIRQG  120
WRSFCDENGK KAGSFFVFKL VGNRETPLLS LCSTESTSNT GSCVEHSTTP PIKSRLMTLT  180
IEHASFRKGS LHLPLRFMKK HGLDKPRLIT LLDKDGTKWV ANLRRESSGG RMRLGKGWKD  240
FALANGLKVG DSFTFELVGK NNTPPMLSLI RTESTSDTRQ PSSGNKTREG KKTIEERRDS  300
SSAIKNQVVT LTLTPDDVRA CQLILPSQFM KANGIYKLGK ITLLGKNGTR WLAFLLSKDG  360
LLALGCGWKD FCEANGVKTG ESFTLECICE DNDTTHVFKF CSNSGE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00057299001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013664049.10.0B3 domain-containing protein REM12
SwissprotP0CAP41e-160REM12_ARATH; B3 domain-containing protein REM12
TrEMBLA0A078HB860.0A0A078HB86_BRANA; BnaA09g41260D protein
STRINGBra007835.1-P0.0(Brassica rapa)
STRINGBo8g099620.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78281641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24680.11e-157B3 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]