PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00057455001

Common Name

GSBRNA2T00057455001, LOC106420091

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

C2H2

Protein Properties

Length: 203aa MW: 22803.5 Da PI: 9.9287

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00057455001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.5	4.9e-05	55	76	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C++Cgk F ++ L H++ H GSBRNA2T00057455001 55 ECQYCGKEFANSQALGGHQNAH 76 7******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.15E-6	51	81	No hit	No description
Gene3D	G3DSA:3.30.160.60	3.4E-5	52	80	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.801	54	81	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	56	76	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence Send to blast
MSRTCESSSG SFSDKSLKLF GFELISGNRS QEVTTTDNVS SSTNNTAPFK AKRLECQYCG 60 KEFANSQALG GHQNAHKKER LKKKRLQLQA RRASIGYYLT THQQPTTKSF QRQYKTPSYC 120 AFSSMHVNSQ IGVFNEEWAS MSSQISFGNK GTCQDINEQN GEMGKMYGVR QNMIQFQRDL 180 TSRSDSKRSI QSLDLHLGFD MA*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Highly expressed in roots, young leaves, developing stems, branches, inflorescence meristems, floral meristems and siliques. Expressed at low levels in rosette and cauline leaves. {ECO:0000269\|PubMed:21803862, ECO:0000269\|PubMed:22762888}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor required for the initiation of inflorescence trichomes in response to gibberellin (GA). Acts upstream of GIS, GIS2, ZFP8 and the trichome initiation regulators GL1 and GL3 (PubMed:21803862, PubMed:22301962). Binds the promoter region of ZFP8, which may be a direct target of ZPF5 (PubMed:21803862). Is not involved in the regulation of trichome branching (PubMed:22301962). Modulates root hair initiation and elongation in response to cytokinin and ethylene signals by directly promoting expression of the CAPRICE (CPC) gene (PubMed:22762888). {ECO:0000269\|PubMed:21803862, ECO:0000269\|PubMed:22301962, ECO:0000269\|PubMed:22762888}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00057455001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cytokinin and ethylene. {ECO:0000269\|PubMed:22762888}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013716378.1	1e-151	zinc finger protein 5
Swissprot	Q39264	4e-98	ZFP5_ARATH; Zinc finger protein 5
TrEMBL	A0A078HBQ1	1e-149	A0A078HBQ1_BRANA; BnaA09g48150D protein
TrEMBL	A0A3P5Y9U3	1e-149	A0A3P5Y9U3_BRACM; Uncharacterized protein
STRING	Bra031715.1-P	1e-124	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7325	25	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10480.1	2e-83	zinc finger protein 5

Link Out ? help Back to Top
Entrez Gene	106420091

Publications ? help Back to Top
Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Savage LJ,Imre KM,Hall DA,Last RL Analysis of essential Arabidopsis nuclear genes encoding plastid-targeted proteins. PLoS ONE, 2013. 8(9): p. e73291 [PMID:24023856] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Sun L, et al. GLABROUS INFLORESCENCE STEMS3 (GIS3) regulates trichome initiation and development in Arabidopsis. New Phytol., 2015. 206(1): p. 220-30 [PMID:25640859] Yu D, et al. RPN1a, a subunit of the 26S proteasome, controls trichome development in Arabidopsis. Plant Physiol. Biochem., 2015. 88: p. 82-8 [PMID:25676129] Kim SY,Hyoung S,So WM,Shin JS The novel transcription factor TRP interacts with ZFP5, a trichome initiation-related transcription factor, and negatively regulates trichome initiation through gibberellic acid signaling. Plant Mol. Biol., 2018. 96(3): p. 315-326 [PMID:29335898]