PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00057652001
Common NameGSBRNA2T00057652001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 178aa    MW: 20016.3 Da    PI: 7.1419
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00057652001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.92.1e-095191954
                         HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                  HLH  9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                          r RR+ri +++  L++++P  a      Kl+ +++L +A+ Y+k L
  GSBRNA2T00057652001 51 ARERRHRISDRLKILQSMVPGgA------KLDTVSMLDEAISYVKFL 91
                         699*****************966......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.9774291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.09E-1247101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-104895IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-114897IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.20E-124895No hitNo description
PfamPF000107.7E-75191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MDQSTLHSLN PYSSSTTSSS SSSLHSRKGR IKGNKNQSMS TLSTDPQSVA ARERRHRISD  60
RLKILQSMVP GGAKLDTVSM LDEAISYVKF LKAQIWFHHN MLLFFNDYET TSPCTYSPVG  120
VSEFESRLFG CDEDYTPVPK TYSQGTPLYM VADPNNPMWY SSVDDEQQET MHRRGLS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00057652001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2409350.0AC240935.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrF042C17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022567119.11e-131transcription factor bHLH140-like
SwissprotQ9M0414e-63BH140_ARATH; Transcription factor bHLH140
TrEMBLA0A078JJL51e-130A0A078JJL5_BRANA; BnaCnng52850D protein
TrEMBLA0A3N6T5141e-130A0A3N6T514_BRACR; Uncharacterized protein
TrEMBLA0A3P6CQR31e-130A0A3P6CQR3_BRAOL; Uncharacterized protein
STRINGBo2g001330.11e-121(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM152901418
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01310.12e-64APRATAXIN-like
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]