PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00058070001

Common Name

GSBRNA2T00058070001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 295aa MW: 32903.3 Da PI: 8.8449

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00058070001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	49.3	8.6e-16	85	136	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r +h ++Er+RR+++N+ ++ Lr+l+P++ ++K + a+i+ A+++Ik+L+ GSBRNA2T00058070001 85 QRITHIAVERNRRRQMNQHLSALRSLMPQP---FAQKGDQASIVGGAIDFIKELE 136 799*************************...9****************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.81E-13	83	139	No hit	No description
SuperFamily	SSF47459	5.1E-17	83	156	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.942	84	135	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.7E-13	85	136	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-14	86	150	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.9E-12	90	141	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MTLEALSSNG LLNFVLSETL SPTSENDIID LEPPLENDII VSKNTVPVIS HQEPSSRQLP 60 PARSGKKRKW RKPRVCKNEE EAENQRITHI AVERNRRRQM NQHLSALRSL MPQPFAQKGD 120 QASIVGGAID FIKELEQQLL SLEAQKLQKA QTNQTVSSST SQESYGEQEN GHKPCSLSLS 180 HFFLHSYDPS QENKVGTTSS VRTAMEDLEV TLIETHANIK ILSRRRGFRW ITVATTGPPQ 240 LSKLMAALES LSLSVLHLSV TTLDTFAIYS ISTKDTCNGI RARQHIMKAW AFGF*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534, ECO:0000269\|PubMed:17088607}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269\|PubMed:17088607}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00058070001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189314	0.0	AC189314.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB034P04, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022548480.1	0.0	transcription factor bHLH71-like isoform X2
Swissprot	Q56XR0	1e-130	BH071_ARATH; Transcription factor bHLH71
TrEMBL	A0A078H9Q5	0.0	A0A078H9Q5_BRANA; BnaA09g18120D protein
STRING	Bra017533.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10389	25	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G46690.1	5e-92	beta HLH protein 71

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]