PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00058100001
Common NameGSBRNA2T00058100001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 335aa    MW: 38252.7 Da    PI: 6.4542
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00058100001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.73.4e-51101421129
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkk...leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                          lppGfrFhP+deelv++yL++k+++k    l+ ++ + e+d++++ePw+Lp  +k + kewyfFs rd+kyatg r+nrat sgyWkatg
  GSBRNA2T00058100001  10 LPPGFRFHPSDEELVCHYLCNKIRAKYdqaLNGATDLVEIDLHTCEPWQLPDVAKLNAKEWYFFSFRDRKYATGYRTNRATISGYWKATG 99 
                          79**********************9994443333459999***********87788999******************************* PP

                  NAM  88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                          kd++v++  +++lvg++ktLvfy++rap+g kt+W+mhe+rle
  GSBRNA2T00058100001 100 KDRTVMDPrTSQLVGMRKTLVFYRNRAPNGIKTTWIMHEFRLE 142
                          *******967888***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.36E-588160IPR003441NAC domain
PROSITE profilePS5100556.07410160IPR003441NAC domain
PfamPF023658.8E-2711141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MGLKDIGSRL PPGFRFHPSD EELVCHYLCN KIRAKYDQAL NGATDLVEID LHTCEPWQLP  60
DVAKLNAKEW YFFSFRDRKY ATGYRTNRAT ISGYWKATGK DRTVMDPRTS QLVGMRKTLV  120
FYRNRAPNGI KTTWIMHEFR LECPNMPPKE DWVLCRVFNK GRDSTLQDTN NEHQTQRFEV  180
NDAPDLNYNN QSQPLLLSPP SNTIDPPHHH DQWEQLIKQP SRSTDHPYHH NCQHQTVACG  240
WEQMMIGSMS SSSSHGPDHE SLLNLLYADN KNSVNITDDN YGHNYGKILL SSDITSLDHD  300
KTCMASSSDG GMVSDLHMEC GGLSFETENL LAFQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-481016017165NO APICAL MERISTEM PROTEIN
1ut4_B5e-481016017165NO APICAL MERISTEM PROTEIN
1ut7_A5e-481016017165NO APICAL MERISTEM PROTEIN
1ut7_B5e-481016017165NO APICAL MERISTEM PROTEIN
3swm_A7e-481016020168NAC domain-containing protein 19
3swm_B7e-481016020168NAC domain-containing protein 19
3swm_C7e-481016020168NAC domain-containing protein 19
3swm_D7e-481016020168NAC domain-containing protein 19
3swp_A7e-481016020168NAC domain-containing protein 19
3swp_B7e-481016020168NAC domain-containing protein 19
3swp_C7e-481016020168NAC domain-containing protein 19
3swp_D7e-481016020168NAC domain-containing protein 19
4dul_A5e-481016017165NAC domain-containing protein 19
4dul_B5e-481016017165NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: First expressed at the globular stage, mostly in the apical part of the embryo. During the triangular stage, confined to the boundary of emerging cotyledons. Later restricted to the center of the apical part of the embryo and to seedling apex, at the boundaries of the cotyledon margins and the boundaries between the SAM and the cotyledons. Localized in a one-cell-wide ring at the boundary between trichomes or lateral roots and epidermis. Accumulates at the boundaries between leaf primordia and the shoot meristem and between floral primordia and the inflorescence meristem. Found in the adaxial axils of secondary inflorescences and pedicels, and in axiallary buds. In flowers, expressed in a ring at the bases of sepals and petals. In carpels, confined to the boundaries between ovule primordia. In ovules, localized in a ring at the boundary between the nucellus and the chalaza. In the mature embryo sac, detected in the two polar nuclei of the central cell. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}.
UniprotTISSUE SPECIFICITY: In a general manner, present at the boundaries between mersitems and araising primordia. {ECO:0000269|PubMed:12837947}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00058100001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF7382730.0KF738273.1 Brassica napus NAC transcription factor 74-1 (NAC74-1.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009129548.10.0PREDICTED: NAC domain-containing protein 21/22
RefseqXP_013696901.10.0NAC domain-containing protein 21/22
SwissprotQ9S8514e-61NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBLA0A078HBS20.0A0A078HBS2_BRANA; BnaA01g08340D protein
STRINGBra011037.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34362862
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.10.0NAC domain containing protein 74
Publications ? help Back to Top
  1. Chen C, et al.
    Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.).
    J. Exp. Bot., 2014. 65(17): p. 4943-58
    [PMID:24962999]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Gonçalves B, et al.
    A conserved role for CUP-SHAPED COTYLEDON genes during ovule development.
    Plant J., 2015. 83(4): p. 732-42
    [PMID:26119568]
  4. Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D
    SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis.
    Plant J., 2017. 90(3): p. 435-446
    [PMID:28161901]
  5. Espinosa-Ruiz A, et al.
    TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana.
    Development, 2017. 144(9): p. 1619-1628
    [PMID:28320734]
  6. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]