PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00058133001
Common NameGSBRNA2T00058133001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 578aa    MW: 65163 Da    PI: 7.8443
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00058133001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.91.3e-16430477355
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          ++hn+ ErrRR++iN+++  L+el+P +      K +Ka++Le A+eY+ksLq
  GSBRNA2T00058133001 430 EMHNISERRRREKINEKMKALQELIPRC-----NKTDKASMLEDAIEYVKSLQ 477
                          58*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.09E-19425484IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.482427476IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.3E-14430477IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.64E-16430481No hitNo description
Gene3DG3DSA:4.10.280.101.1E-20431482IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-17433482IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 578 aa     Download sequence    Send to blast
MFAYMYCDTK YVYYIAGNHV FCKRTKHMKS DCHFIKDDIQ AEILRMNHIP QWINYRRNKK  60
NINSKDPTQN TLSSKKDNHF EKKIYEVFRR FFCALGVVSW SFMGKPEEKQ LMFILTNSFW  120
EYLKYYIYMV VHKYKSYNFN MSTLIRDLVC IYISRYESTM GEDDIVELLW KSGHLVRSSQ  180
AQRPSVPPPP PVLRGSGSGG GGSGEESAPL PLPPPLQQPS DDQNLFIRED EMASWLLHHH  240
PLREEDDFHS HLFYSGVVSA VPSTQPQASV SLAPPLPIPP AIHTPTAAER SMGQVIVERR  300
GENFLNFSRL RGNIHTSGGV EVAAAPWVPV VVRDLTQVGS SATPSSSAPE SCLTPATVTG  360
GVAQTFAVPS LSGKAVETET EPAQIKPSTE TTEAADERKR KEREDAAEDT EETGEEARGS  420
TSRKRSRAAE MHNISERRRR EKINEKMKAL QELIPRCNKT DKASMLEDAI EYVKSLQMQI  480
QASMGMMCVN RPPFITFPGT AFPRPPAHMV GLDPSYPAPR YPIPNIQAFD PSRVQQPDPV  540
QNQSQFPGYL NPYSQFVGLQ QMQHPPPPPL QVINTFQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1422439RKRSRAAEMHNISERRRR
2435440ERRRRE
3436441RRRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00058133001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013588924.10.0PREDICTED: transcription factor bHLH119-like isoform X1
SwissprotQ9SVU71e-118BH056_ARATH; Putative transcription factor bHLH056
TrEMBLA0A078HBT60.0A0A078HBT6_BRANA; BnaA01g08090D protein
STRINGBo1g017090.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM90411635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28800.18e-84bHLH family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]