PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00058135001
Common NameGSBRNA2T00058135001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 260aa    MW: 29814.8 Da    PI: 9.9881
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00058135001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH54.32.4e-1767114355
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          ++hn+ ErrRR++iN+++  L+el+P +      K +Ka++Le A+eY+ksLq
  GSBRNA2T00058135001  67 EMHNISERRRREKINEKLKALQELIPRC-----NKTDKASMLEDAIEYVKSLQ 114
                          58*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.29E-2162123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.5264113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.0E-1567114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.04E-1767118No hitNo description
Gene3DG3DSA:4.10.280.102.0E-2168122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-1870119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MSPCGPIKRE TKNPTWKVMR SCKYRKLCSM HRDTRFLGAE KIGSLLFETG EEEARGSTSR  60
KRSRAAEMHN ISERRRREKI NEKLKALQEL IPRCNKTDKA SMLEDAIEYV KSLQLQIQMM  120
SMGGGGMMPM MYNPNMQCFM APSAMGMNRP PFIPFPGTAF PRPPAHMAGL GPPYPAPPRY  180
PFPNVHQPDP NQPQFPSYLN PYSQFVGLQQ MQQPPPPLQV YFFFFYIIHC ALYSYVPYNG  240
RCSQDGVLKC FNRIKQHHI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15976RKRSRAAEMHNISERRRR
27277ERRRRE
37378RRRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00058135001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009129259.16e-91PREDICTED: putative transcription factor bHLH056
SwissprotQ9SVU72e-63BH056_ARATH; Putative transcription factor bHLH056
TrEMBLA0A078HCM20.0A0A078HCM2_BRANA; BnaA01g08070D protein
STRINGBo1g017090.12e-85(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM90411635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28800.11e-51bHLH family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]