PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00058304001
Common NameGSBRNA2T00058304001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 204aa    MW: 22559.3 Da    PI: 4.6774
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00058304001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.51.1e-152573355
                  AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         y+G r ++ +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a ++++g
  GSBRNA2T00058304001 25 YRGARMRS-WGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDVAELSIKG 73
                         89999888.**********843...6*********************999877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.56E-202481IPR016177DNA-binding domain
SMARTSM003801.5E-342487IPR001471AP2/ERF domain
PfamPF008478.6E-102473IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.7E-302482IPR001471AP2/ERF domain
PROSITE profilePS5103222.5762481IPR001471AP2/ERF domain
PRINTSPR003672.9E-102536IPR001471AP2/ERF domain
CDDcd000181.00E-302583No hitNo description
PRINTSPR003672.9E-104763IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MVASNGEDTE RSSTRKKKET SAVVYRGARM RSWGKWVSEI REPRKKSRIW LGTFPTAEMA  60
ARAHDVAELS IKGSSAILNF PELSNSLPRP VSLSPADIQA AATKAAFMEF KTPSLHLEDE  120
TPSQTRCETE TSDKASSSPT TSTLSEELGE IVELPTLDNE LSKDFALFDS LEVLVGMPPW  180
LDATEKDPVL FDQLFQESLL WNH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1825851576Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, seeds and stamen. {ECO:0000269|PubMed:16307362}.
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00058304001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By drought. {ECO:0000269|PubMed:16307362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013747097.11e-145ethylene-responsive transcription factor ERF042-like
RefseqXP_022574559.11e-145ethylene-responsive transcription factor ERF042-like
SwissprotQ52QU17e-82ERF42_ARATH; Ethylene-responsive transcription factor ERF042
TrEMBLA0A078HD051e-145A0A078HD05_BRANA; BnaA04g15130D protein
TrEMBLA0A3P6D2961e-145A0A3P6D296_BRACM; Uncharacterized protein
STRINGBra034273.1-P1e-133(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25820.12e-80ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]