PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00058339001
Common NameGSBRNA2T00058339001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 130aa    MW: 14397.7 Da    PI: 10.6426
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00058339001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.14e-1760110155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          ++ykGVr ++ +g+W AeI+dps    + r +lg f tae+Aa+a+++a+ ++ g
  GSBRNA2T00058339001  60 KKYKGVRKKP-SGKWSAEIWDPSL---KVRRWLGMFPTAEMAARAYDEAAAEFIG 110
                          59*****999.7*********943...5999*******************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.79E-1560100No hitNo description
PfamPF008471.7E-961110IPR001471AP2/ERF domain
PROSITE profilePS5103219.70461122IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.1E-2261111IPR001471AP2/ERF domain
SMARTSM003807.3E-2661125IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-1661112IPR016177DNA-binding domain
PRINTSPR003674.6E-76273IPR001471AP2/ERF domain
PRINTSPR003674.6E-784100IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MVSALRQVIS KVGRDTSSPN GITSGVDLPL PDAGPCPLCG ITGCYGCAFQ RKDEETKREK  60
KYKGVRKKPS GKWSAEIWDP SLKVRRWLGM FPTAEMAARA YDEAAAEFIG RISARRGQMN  120
GHVIKRWRR*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00058339001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013645777.29e-92ethylene-responsive transcription factor ERF120-like
SwissprotQ38Q401e-51EF122_ARATH; Ethylene-responsive transcription factor ERF122
TrEMBLA0A078HD433e-90A0A078HD43_BRANA; BnaA04g14830D protein
STRINGBra034249.1-P4e-71(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34721562
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20350.12e-38ERF family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]