PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00058391001
Common NameGSBRNA2T00058391001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HSF
Protein Properties Length: 240aa    MW: 27939.9 Da    PI: 4.9948
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00058391001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.62.7e-35411322102
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl k+y+++ed++++e+isw+e+g+ f+v+++ efa+++Lp+ Fkh nf+SFvRQLn+YgF+kv++++         weF+++ F+kg++
  GSBRNA2T00058391001  41 FLVKTYKVVEDPTTDEVISWNEDGTGFIVWQPAEFARDLLPTLFKHCNFSSFVRQLNTYGFRKVSTTR---------WEFSNEMFRKGQR 121
                          9*****************************************************************99.........************* PP

                          XXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkks 102
                          el+++i+r+ks
  GSBRNA2T00058391001 122 ELMCNIRRRKS 132
                          *********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.4E-3731125IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.54E-3337130IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.2E-5737130IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.0E-3141130IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-184164IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-187991IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434080104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-1892104IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MEDDHLRCHD NINDDERLPL EFMTGKQTST AELQPPQPPP FLVKTYKVVE DPTTDEVISW  60
NEDGTGFIVW QPAEFARDLL PTLFKHCNFS SFVRQLNTYG FRKVSTTRWE FSNEMFRKGQ  120
RELMCNIRRR KSYPHSHSHN KSHQVVPTTT TEKQEDHHLE DQRSSSSSSP FVYSALLDEN  180
KCLKNENEFL SSELGKTKKK CKQLMELVER YKGEENNDDD DDDDDNDDQG LKLFGVKLE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-213513014120Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00305DAPTransfer from AT2G41690Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00058391001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009133506.11e-180PREDICTED: heat stress transcription factor B-3
SwissprotO222301e-129HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBLA0A078HD891e-179A0A078HD89_BRANA; BnaA03g19560D protein
TrEMBLA0A397ZWW81e-179A0A397ZWW8_BRACM; Uncharacterized protein
TrEMBLM4C7Q71e-179M4C7Q7_BRARP; Uncharacterized protein
STRINGBra000235.1-P1e-179(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM108142731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.11e-126heat shock transcription factor B3
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]