PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00058547001

Common Name

GSBRNA2T00058547001, LOC106453474

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 295aa MW: 33083.1 Da PI: 4.621

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00058547001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.1	4.3e-10	143	190	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ rE++RR+ +N++f L ++l + + +K +K iL A++ +++L GSBRNA2T00058547001 143 TKACREKKRRELLNDKFMDLSSVLEPT---RTPKTDKPVILDDAIRVVNHL 190 6789********************9...9****************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.424	139	190	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.06E-8	139	191	No hit	No description
Pfam	PF00010	3.0E-7	143	190	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.6E-9	145	196	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.19E-12	145	213	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.8E-11	145	212	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MMYQSNEEDD DLLASLCFDQ SNGGEDPYGF MQTDQENLFP EFDVNLLPEE EQVCNNIGDQ 60 FDAFSGNLDS NGLGPFGGSS QLDMGTHQVC SFRGTATHVQ QGQACCPVVE INSSSSVEIV 120 KEEFEEECSR KRGRTGPCRK PGTKACREKK RRELLNDKFM DLSSVLEPTR TPKTDKPVIL 180 DDAIRVVNHL RGEAHELKET NQKLLEEIKS LKAEKNELRE EKMVLKSDKE KMEQQMRSMA 240 AVPSPGFMPA AFHQNKMAVY GSYGYYPNIP MMPYLLPPSQ RDTSQDQENC SKAA*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	129	151	RKRGRTGPCRKPGTKACREKKRR

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00058547001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013751177.1	0.0	transcription factor bHLH34
Refseq	XP_013751183.1	0.0	transcription factor bHLH34
Swissprot	Q9LTC7	1e-124	BH034_ARATH; Transcription factor bHLH34
TrEMBL	A0A078HAQ3	0.0	A0A078HAQ3_BRANA; BnaA01g24020D protein
STRING	Bo1g102270.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4026	26	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23210.1	1e-111	bHLH family protein

Link Out ? help Back to Top
Entrez Gene	106453474

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Li X,Zhang H,Ai Q,Liang G,Yu D Two bHLH Transcription Factors, bHLH34 and bHLH104, Regulate Iron Homeostasis in Arabidopsis thaliana. Plant Physiol., 2016. 170(4): p. 2478-93 [PMID:26921305] Liang G,Zhang H,Li X,Ai Q,Yu D bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(7): p. 1743-1755 [PMID:28369511] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]