PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00058895001
Common NameGSBRNA2T00058895001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 229aa    MW: 25704.2 Da    PI: 6.5533
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00058895001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.81.2e-1072116552
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIk 52 
                          +  rE++RRd++N++f eL ++l +    +++K +K++i   +++ ++
  GSBRNA2T00058895001  72 KASREKQRRDKLNDKFTELSSILEPG---RAPKTDKVAIINDVIRMVN 116
                          6789*********************9...9**********99998776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.48767118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.77E-770123No hitNo description
SuperFamilySSF474591.05E-1172145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-872117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-1173140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-673124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MVFPENTNWL SDYPLIDGVF SHQSPTFPWQ IDGSATVTVE EVDGFLCDSD VIKEPGSKKR  60
VKSESYAGPS SKASREKQRR DKLNDKFTEL SSILEPGRAP KTDKVAIIND VIRMVNQARD  120
EAQRLKDLNS SLQEKIKELK DEKNELRDEK QKLKIEKDRI EQQLKAINTQ PLPAQPCFLP  180
NPPTLSQAQA PGSKLVPYTT YPGFAMWQFM PPAAVDTSQD HVLRPPVA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.176991e-153bud| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00058895001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3534060.0AK353406.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-30-I24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022559198.11e-168transcription factor bHLH115
SwissprotQ9C6821e-145BH115_ARATH; Transcription factor bHLH115
TrEMBLA0A078HCZ01e-167A0A078HCZ0_BRANA; BnaC05g27050D protein
TrEMBLA0A3P6FJF01e-167A0A3P6FJF0_BRAOL; Uncharacterized protein
STRINGBo00779s020.11e-162(Brassica oleracea)
STRINGBo1g118840.11e-162(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14372890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51070.11e-147bHLH family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Liang G,Zhang H,Li X,Ai Q,Yu D
    bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(7): p. 1743-1755
    [PMID:28369511]