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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
GSBRNA2T00058940001 |
| Common Name | GSBRNA2T00058940001, LOC106375866 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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| Family |
GRAS |
| Protein Properties |
Length: 532aa MW: 58802.8 Da PI: 6.3676 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| GSBRNA2T00058940001 | genome | Genoscope | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 404 | 1.5e-123 | 154 | 524 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90
l+e+L+e+A+avs+gd+++a ++ l++++s +g+p+qRl +y++e+L+arl++++ ++y+al+++e + e ++++ +++e++P+
GSBRNA2T00058940001 154 LKEVLVEAARAVSEGDFAAACGFIDVLEQMVSVSGTPIQRLGTYMAEGLRARLQGTGGNIYRALKCNEPT---GRELMSYMGVLYEICPY 240
5789*****************************************************************9...99999999********* PP
GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178
kf++ +aN aI eav+ge+rvHiiDf+i qG Q++ L+++La+Rp+gpp lR+Tgv++++s + l+ +ge+La++A++ gvpfef
GSBRNA2T00058940001 241 WKFAYNAANAAIFEAVAGEKRVHIIDFQIAQGSQYMFLINELAKRPGGPPLLRVTGVDDSQSRyaRGGGLSLIGEKLADMAQSRGVPFEF 330
***********************************************************999899999********************** PP
GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
+ + + +++ e+L v+pg a++Vn+ + lh+++desvs+e++rd++L+l+ksl Pk+v++veqe+++n+++Fl rf+e+l+yy+a+f
GSBRNA2T00058940001 331 HD-AIMSGCKVHREHLGVEPGFAVVVNFPYVLHHMPDESVSVENHRDRLLHLIKSLGPKLVTLVEQESNTNTSPFLSRFVETLDYYTAMF 419
**.788899999****************************************************************************** PP
GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358
+s++a pr++++ri+ E+++++r+ivn++ace+aer+erhe l+kWr r+++aGF p+s++aa a+ +l+ ++++ y++ e++g+l
GSBRNA2T00058940001 420 ESIDAARPRDDKQRISAEQHCVARDIVNMIACEEAERVERHEVLGKWRVRMMMAGFMGWPVSSSAAFAASEMLKGYDKN-YKLGESEGAL 508
*****************************************************************************66.********** PP
GRAS 359 vlgWkdrpLvsvSaWr 374
+l Wk+rp+ ++SaW+
GSBRNA2T00058940001 509 YLFWKRRPMATCSAWK 524
***************8 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 532 aa
Download sequence Send
to blast |
MQTSQKHHSA AGLHMLYPQV HCSPQFQVID NKKGFSDTPS KESFFTLESS TASGPLPSYE 60
SPSVSITSGR SPFSPQASCI SDLHPSPENI YGSPLSGASS HVYDEAHVKN KIRELEVSLL 120
SVDPKVEEYS GFSPAAGKSW NWDELLALTP QLDLKEVLVE AARAVSEGDF AAACGFIDVL 180
EQMVSVSGTP IQRLGTYMAE GLRARLQGTG GNIYRALKCN EPTGRELMSY MGVLYEICPY 240
WKFAYNAANA AIFEAVAGEK RVHIIDFQIA QGSQYMFLIN ELAKRPGGPP LLRVTGVDDS 300
QSRYARGGGL SLIGEKLADM AQSRGVPFEF HDAIMSGCKV HREHLGVEPG FAVVVNFPYV 360
LHHMPDESVS VENHRDRLLH LIKSLGPKLV TLVEQESNTN TSPFLSRFVE TLDYYTAMFE 420
SIDAARPRDD KQRISAEQHC VARDIVNMIA CEEAERVERH EVLGKWRVRM MMAGFMGWPV 480
SSSAAFAASE MLKGYDKNYK LGESEGALYL FWKRRPMATC SAWKPNPNQI V*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: During development, higher expression levels are detected in young rosette leaves, senescing leaves and petals and sepals at flower stage 15. {ECO:0000269|PubMed:16680434}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in roots, hypocotyls, cotyledons, shoot apex, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:16680434, ECO:0000269|PubMed:18500650}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC232568 | 0.0 | AC232568.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH122A22, complete sequence. |
