PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00058958001
Common NameGSBRNA2T00058958001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 415aa    MW: 45860 Da    PI: 8.0839
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00058958001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix63.74.2e-2033122186
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          +W ++e+ aL++a+++++ +lrrg+l++++W++v++++      +g  +s++qC++k+e+l+kry+ +k+++ +r  + ss++ +f  l+
  GSBRNA2T00058958001  33 CWNDEETAALVNAYKDKWFALRRGNLRAADWDDVAAAVsslhTLGGPAKSAIQCRHKIEKLRKRYRGEKQRSLNRPGKFSSSWDLFPILD 122
                          7*************************************888777889****************************9999*******9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.0E-2032124No hitNo description
SMARTSM005950.009741129IPR006578MADF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MSTPDGSPVA MAVDPSTAVT VATTTTRRVP PPCWNDEETA ALVNAYKDKW FALRRGNLRA  60
ADWDDVAAAV SSLHTLGGPA KSAIQCRHKI EKLRKRYRGE KQRSLNRPGK FSSSWDLFPI  120
LDAMEFAPVT PTAVEPYDPD LDNDDESNGL DGFRVRSKRS GKFDSPRDGF GVRSRSKSQM  180
KMYGGFDSDH DSGGGFGLKR RYNGNPKVSG DFDADSDDEI VLVPKATRLK GSHGKPSSGE  240
FGGGFPLKSF GDRSFASHGF KAKNFSKPEA NFSPEMDYDD EFDEGFNPRI QHSRSSSRAN  300
GYGRKDGSYP RNNNTGVSNG YGSSSRFKHE QMNAAADVES DPIDEVVSSV KMLTEMFVRV  360
ENSKMEMMRE MEKTRMEMEL KHCQMMLESQ QQIIGAFAEA LSEKKSTNAR RPGS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.73040.0seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00058958001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325680.0AC232568.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH122A22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013601310.10.0PREDICTED: uncharacterized protein LOC106308728
RefseqXP_013671350.10.0uncharacterized protein BNAC01G21240D isoform X2
RefseqXP_013671351.10.0uncharacterized protein BNAC01G21240D isoform X1
RefseqXP_022558038.10.0uncharacterized protein BNAC01G21240D isoform X3
SwissprotO235501e-155FRIP2_ARATH; Protein FIP2
TrEMBLA0A078HCS50.0A0A078HCS5_BRANA; BnaC01g21240D protein
TrEMBLA0A0D3A7F00.0A0A0D3A7F0_BRAOL; Uncharacterized protein
TrEMBLA0A3P6G0F30.0A0A3P6G0F3_BRAOL; Uncharacterized protein
STRINGBo1g052990.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM104831828
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.11e-21Trihelix family protein
Publications ? help Back to Top
  1. Sakai T, et al.
    The wavy growth 3 E3 ligase family controls the gravitropic response in Arabidopsis roots.
    Plant J., 2012. 70(2): p. 303-14
    [PMID:22122664]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]