PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00059078001

Common Name

GSBRNA2T00059078001, LOC106427323

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 344aa MW: 38374.5 Da PI: 4.9054

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00059078001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	158	3.9e-49	22	147	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 pGf+F+Ptd el+++yLk+k++g + ++ evi+e+diy++ePwdLp k++ ++++ew+fF+ r kky++g++++ratk gyWkatgk++ GSBRNA2T00059078001 22 FPGFKFSPTDVELISYYLKRKMDGLERSV-EVIPETDIYNFEPWDLPdKSIVKSDTEWFFFCARGKKYPHGSQNRRATKMGYWKATGKER 110 69**********************999.99***********778888999****************************** PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +v+s +++++g+k+tLvf+ grapkge+t+W+mhey + GSBRNA2T00059078001 111 DVKS-SSQVIGTKRTLVFHIGRAPKGERTEWLMHEYCM 147 .999**************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.15E-54	11	163	IPR003441	NAC domain
PROSITE profile	PS51005	51.681	21	164	IPR003441	NAC domain
Pfam	PF02365	1.4E-24	23	146	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence Send to blast
MEAEAMGGFK DTAASVEAAT VFPGFKFSPT DVELISYYLK RKMDGLERSV EVIPETDIYN 60 FEPWDLPDKS IVKSDTEWFF FCARGKKYPH GSQNRRATKM GYWKATGKER DVKSSSQVIG 120 TKRTLVFHIG RAPKGERTEW LMHEYCMEGV STDDALVVCR LRRNKEFHTS TSQKAPEPDL 180 PAEKHMIMQN GGGASSSSAH DWASMVDFYL AGESGEELLN EIAETSENLQ VHTEEDFFAD 240 ILKDEIINVD EAVTTGNIAN EVPTLESASK AIRVLPLPSM IDKQMASLLE ESPSQQKKGK 300 GSSGTDQLSS CFVGIYSIKT VNRVRWDVII CLVAFIVMFF CLE*

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence Send to blast

MEAEAMGGFK DTAASVEAAT VFPGFKFSPT DVELISYYLK RKMDGLERSV EVIPETDIYN  60
FEPWDLPDKS IVKSDTEWFF FCARGKKYPH GSQNRRATKM GYWKATGKER DVKSSSQVIG  120
TKRTLVFHIG RAPKGERTEW LMHEYCMEGV STDDALVVCR LRRNKEFHTS TSQKAPEPDL  180
PAEKHMIMQN GGGASSSSAH DWASMVDFYL AGESGEELLN EIAETSENLQ VHTEEDFFAD  240
ILKDEIINVD EAVTTGNIAN EVPTLESASK AIRVLPLPSM IDKQMASLLE ESPSQQKKGK  300
GSSGTDQLSS CFVGIYSIKT VNRVRWDVII CLVAFIVMFF CLE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-41	23	174	19	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-41	23	174	19	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-41	23	174	19	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-41	23	174	19	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-41	23	174	22	174	NAC domain-containing protein 19
3swm_B	1e-41	23	174	22	174	NAC domain-containing protein 19
3swm_C	1e-41	23	174	22	174	NAC domain-containing protein 19
3swm_D	1e-41	23	174	22	174	NAC domain-containing protein 19
3swp_A	1e-41	23	174	22	174	NAC domain-containing protein 19
3swp_B	1e-41	23	174	22	174	NAC domain-containing protein 19
3swp_C	1e-41	23	174	22	174	NAC domain-containing protein 19
3swp_D	1e-41	23	174	22	174	NAC domain-containing protein 19
4dul_A	1e-41	23	174	19	171	NAC domain-containing protein 19
4dul_B	1e-41	23	174	19	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in plant cell division. {ECO:0000269\|PubMed:16803883}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00059078001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF974764	0.0	KF974764.1 Brassica napus NAC transcription factor 89-1 (NAC89-1.1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013723506.1	0.0	NAC domain-containing protein 89
Swissprot	Q94F58	0.0	NAC89_ARATH; NAC domain-containing protein 89
TrEMBL	A0A078HD91	0.0	A0A078HD91_BRANA; BnaC02g09420D protein
STRING	Bo2g023820.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4309	23	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22290.1	0.0	NAC domain containing protein 89

Link Out ? help Back to Top
Entrez Gene	106427323

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]