PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00059111001
Common NameGSBRNA2T00059111001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 286aa    MW: 32472.5 Da    PI: 7.2408
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00059111001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY64.22.2e-20100159359
                          -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                          Dg+ WrKYGqK++k+s++ rsYYrC+++    C ++k+ ++ +++p v  +tY g+H+++
  GSBRNA2T00059111001 100 DGFLWRKYGQKTIKQSKHQRSYYRCSYNidhACGARKHEQKIKDNPPVYRTTYFGHHTCN 159
                          9**************************99999**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081118.76293161IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.4E-2095159IPR003657WRKY domain
SuperFamilySSF1182903.66E-2097160IPR003657WRKY domain
SMARTSM007741.7E-2998160IPR003657WRKY domain
PfamPF031061.4E-20100158IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MAKTNTLNSM NTSHEKAVQA ILYGQSCAKR LKLQLDHPIA GGRSDNLFSD LSSRDSSSSS  60
SSSSPSPSLP QRSHSKKRKN NNTNSSENWR HDSPDPNYYD GFLWRKYGQK TIKQSKHQRS  120
YYRCSYNIDH ACGARKHEQK IKDNPPVYRT TYFGHHTCNI NHKVHNQDAG LTTVGESVND  180
LENSRMIWFG KDLDQEKESH TSGLSISVKH EEGSIKEETM DQYRGITSHD KDCQNVIKEN  240
HQPSPSGSYT PPSSSGSEID MFDSDLLVED LDLWDRYDMY DFGLR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-151001581068OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17078QRSHSKKRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00059111001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013733380.10.0probable WRKY transcription factor 38
RefseqXP_013733385.10.0probable WRKY transcription factor 38
SwissprotQ8GWF14e-98WRK38_ARATH; Probable WRKY transcription factor 38
TrEMBLA0A078HDB40.0A0A078HDB4_BRANA; BnaC02g09670D protein
STRINGBo2g024040.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136731727
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22570.12e-75WRKY DNA-binding protein 38
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Singh V,Roy S,Singh D,Nandi AK
    Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes.
    J. Biosci., 2014. 39(1): p. 119-26
    [PMID:24499796]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  4. Janda M, et al.
    Phospholipase D affects translocation of NPR1 to the nucleus in Arabidopsis thaliana.
    Front Plant Sci, 2015. 6: p. 59
    [PMID:25741350]