PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00059199001

Common Name

GSBRNA2T00059199001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

VOZ

Protein Properties

Length: 459aa MW: 51036.3 Da PI: 5.1515

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00059199001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	434.5	1.4e-133	184	401	1	217
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspw 90 pppsaflgpkcalwdc+rpaqg +w+qdycssfha+la+neg+pg++pv+rp+gi+lkdgllfaalsak+ gk+vgipecegaatakspw GSBRNA2T00059199001 184 PPPSAFLGPKCALWDCPRPAQGLDWFQDYCSSFHAALAFNEGPPGMNPVVRPGGIGLKDGLLFAALSAKAGGKDVGIPECEGAATAKSPW 273 89************************************************************************************** PP VOZ 91 naaelfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldal 180 na+elfdl++le+et+rewlffdkprrafesgnrkqrslpdy+grgwhesrkqvm efgglkrsyymdpqp+++fewhlyeyeine+da+ GSBRNA2T00059199001 274 NAPELFDLTVLESETLREWLFFDKPRRAFESGNRKQRSLPDYNGRGWHESRKQVMSEFGGLKRSYYMDPQPLHHFEWHLYEYEINECDAC 363 ************************************************************************************** PP VOZ 181 alyrlelklv.dekksakgkvskdsladlqkklgrlta 217 alyrlelklv d+kk++kgk+s++s+adlqk++ rlta GSBRNA2T00059199001 364 ALYRLELKLVfDGKKNSKGKLSTESVADLQKQMRRLTA 401 ****9769**********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 459 aa Download sequence Send to blast
MTGKRSKTTC RSVSHKLFKD KAKNRVDDLQ GMLLDLQFAR RESSALDVTL LEEQVNLMLR 60 EWKSELNEPS TASSLQHGGG TLGSFSTDIC RLLQLCDEED DATSKLAAPK PEPTDQNLEP 120 YGPLADHCKD PPLVVGNNLD GTAHLDYNLQ QEFEPDFNGG FNDCPGYGVG GPLDISAFIP 180 TICPPPSAFL GPKCALWDCP RPAQGLDWFQ DYCSSFHAAL AFNEGPPGMN PVVRPGGIGL 240 KDGLLFAALS AKAGGKDVGI PECEGAATAK SPWNAPELFD LTVLESETLR EWLFFDKPRR 300 AFESGNRKQR SLPDYNGRGW HESRKQVMSE FGGLKRSYYM DPQPLHHFEW HLYEYEINEC 360 DACALYRLEL KLVFDGKKNS KGKLSTESVA DLQKQMRRLT AEFPQENNNN KRCIKGRTKV 420 NTKVATGNVQ NTAEQTNEYG VGEEFNYLVG NLTDYYVN*

Sequence ? help Back to Top

Protein Sequence Length: 459 aa Download sequence Send to blast

MTGKRSKTTC RSVSHKLFKD KAKNRVDDLQ GMLLDLQFAR RESSALDVTL LEEQVNLMLR  60
EWKSELNEPS TASSLQHGGG TLGSFSTDIC RLLQLCDEED DATSKLAAPK PEPTDQNLEP  120
YGPLADHCKD PPLVVGNNLD GTAHLDYNLQ QEFEPDFNGG FNDCPGYGVG GPLDISAFIP  180
TICPPPSAFL GPKCALWDCP RPAQGLDWFQ DYCSSFHAAL AFNEGPPGMN PVVRPGGIGL  240
KDGLLFAALS AKAGGKDVGI PECEGAATAK SPWNAPELFD LTVLESETLR EWLFFDKPRR  300
AFESGNRKQR SLPDYNGRGW HESRKQVMSE FGGLKRSYYM DPQPLHHFEW HLYEYEINEC  360
DACALYRLEL KLVFDGKKNS KGKLSTESVA DLQKQMRRLT AEFPQENNNN KRCIKGRTKV  420
NTKVATGNVQ NTAEQTNEYG VGEEFNYLVG NLTDYYVN*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.23152	2e-92	root\| seed

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. Expressed in the vascular bundles of various tissues, specifically in the phloem. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00059199001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB125256	0.0	AB125256.1 Arabidopsis thaliana AtVOZ1 mRNA for transcription factor AtVOZ1, complete cds.
GenBank	AK227014	0.0	AK227014.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL09-45-I22.
GenBank	AK317006	0.0	AK317006.2 Arabidopsis thaliana AT1G28520 mRNA, partial cds, clone: RAFL16-07-G16.
GenBank	BT020261	0.0	BT020261.1 Arabidopsis thaliana At1g28520 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013685404.1	0.0	transcription factor VOZ1-like isoform X2
Swissprot	Q9SGQ0	0.0	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	A0A078HG07	0.0	A0A078HG07_BRANA; BnaC03g58740D protein
STRING	Bo3g143600.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6667	27	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	0.0	vascular plant one zinc finger protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]