PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00059242001
Common NameGSBRNA2T00059242001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 206aa    MW: 23814.4 Da    PI: 8.2287
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00059242001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.64.4e-161862147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         rg  T++E+ ++++++ ++G++ W+tIar+++ gRt++++k++w+++
  GSBRNA2T00059242001 18 RGQITPQEEGIILELHSLWGNK-WSTIARYLP-GRTDNEIKNYWRTH 62
                         7888******************.*********.************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-191666IPR009057Homeodomain-like
SuperFamilySSF466896.63E-131665IPR009057Homeodomain-like
PROSITE profilePS5129420.3791667IPR017930Myb domain
SMARTSM007171.8E-131765IPR001005SANT/Myb domain
PfamPF002496.3E-141862IPR001005SANT/Myb domain
CDDcd001672.19E-102262No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MFCQTIPSAL FNILWLKRGQ ITPQEEGIIL ELHSLWGNKW STIARYLPGR TDNEIKNYWR  60
THYKKKDKSF SKQDKYKRSR KQLGMQPQPQ NQRSQMVSQN HMNHDNEQNI ASSFSYPTSV  120
IHDQFHMPQS VTATSSDHSM IDEGNLWGSL WSLNDEDRPH RFGGGWEQRT AADISEKFNG  180
DRIEAPPCGS GEYNYNGFYT GGYIF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00059242001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3719804e-63AF371980.2 Arabidopsis thaliana putative transcription factor MYB121 (MYB121) mRNA, complete cds.
GenBankAY5195934e-63AY519593.1 Arabidopsis thaliana MYB transcription factor (At3g30210) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022562449.11e-141myb-related protein MYBAS2-like
TrEMBLA0A078HD761e-154A0A078HD76_BRANA; BnaC02g38120D protein
STRINGBra020744.1-P1e-123(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30210.11e-89myb domain protein 121
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]