PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00059244001

Common Name

GSBRNA2T00059244001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

MYB_related

Protein Properties

Length: 86aa MW: 9687.75 Da PI: 7.4401

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00059244001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	37.1	7.2e-12	31	62	1	32
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg 32 +g+WT+eEd+ll ++v+ G g W+++a++ g GSBRNA2T00059244001 31 KGPWTPEEDKLLTEYVTSKGEGKWSSVAKCAG 62 79****************************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.464	26	85	IPR017930	Myb domain
SuperFamily	SSF46689	6.6E-9	29	66	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.2E-12	30	63	IPR009057	Homeodomain-like
Pfam	PF00249	1.9E-9	31	63	IPR001005	SANT/Myb domain
CDD	cd00167	1.24E-6	33	63	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 86 aa Download sequence Send to blast
MLDWGVDQVH QPNHDHDPYQ KQQKQLQGCR KGPWTPEEDK LLTEYVTSKG EGKWSSVAKC 60 AGTINKDKLG DRGDDRLSSC RNFTV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00059244001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013619948.1	9e-39	PREDICTED: myb-related protein 340-like
TrEMBL	A0A078HEB1	4e-57	A0A078HEB1_BRANA; BnaC02g38100D protein
STRING	Bo2g149430.1	3e-39	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM31175	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G30210.1	7e-23	myb domain protein 121

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]