PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00059491001

Common Name

GSBRNA2T00059491001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

FAR1

Protein Properties

Length: 213aa MW: 24169.5 Da PI: 9.2304

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00059491001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	91.2	1.4e-28	43	130	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Y++YA+++GF +r+++ +ks r+g++++r++vC+keg+r+++ ++ +++r++ra tr gCka ++vkk+k+gkw v+k+++eHnH+l GSBRNA2T00059491001 43 LYDSYATSTGFVMRVDAFRKSMRDGTVVWRRLVCNKEGFRRSRPRR-SESRKPRAITREGCKALIVVKKDKSGKWIVAKFVKEHNHPLL 130 7*****************************************99.9*************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-26	43	130	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MAVEGNLLRG EDVVENTITE EASSVVEPFI GMEFESEEAA KSLYDSYATS TGFVMRVDAF 60 RKSMRDGTVV WRRLVCNKEG FRRSRPRRSE SRKPRAITRE GCKALIVVKK DKSGKWIVAK 120 FVKEHNHPLL SSLTNGRQSS QISQPPDEKD VKIKELSTEL SRERKRCATL QQQLDMVLEV 180 MEEHSNHLSV NINNVIQSVR EIESNTFTKP LS*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00059491001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013750576.1	1e-153	protein FAR1-RELATED SEQUENCE 5-like
Swissprot	Q9SZL8	2e-28	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A078HDP3	1e-154	A0A078HDP3_BRANA; BnaA05g30130D protein
STRING	Bo5g141470.1	1e-118	(Brassica oleracea)
STRING	Bostr.22252s0282.1.p	1e-118	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13524	22	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	1e-106	FAR1 family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]