PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00059637001

Common Name

GSBRNA2T00059637001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

G2-like

Protein Properties

Length: 328aa MW: 37388.7 Da PI: 9.4358

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00059637001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	99.6	2.2e-31	54	107	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH +Fv+av++LGG+++AtPk +l++m++kgL+++hvkSHLQ+YR+ GSBRNA2T00059637001 54 PRLRWTPDLHLSFVRAVQRLGGPHRATPKMVLQMMNLKGLSIAHVKSHLQMYRS 107 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.601	50	110	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.3E-28	50	108	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.52E-13	54	108	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.2E-22	54	109	IPR006447	Myb domain, plants
Pfam	PF00249	2.8E-8	55	106	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MDGTSSREKC AMWLDLNREE AVEKYNEEES SVEDEDQQVT SSNNVRQYVR SNMPRLRWTP 60 DLHLSFVRAV QRLGGPHRAT PKMVLQMMNL KGLSIAHVKS HLQMYRSKKL EATSLHEVGA 120 MMGARRNYLL DMIDIPYGGL RHACYPKTVP SREHNQGTVF TNLGANFVMR PSSWCNRSSG 180 HELNNVRGGL NRESMESKTL PLLEEGDPRE KSPRRRGKRS TISQTIKTNE RRWDQHDALA 240 VSVLNIIRRV TVVMASDIVE TIWVRLDSDP TELSVDKLMR ETDTIKFRAD RSSVESSLGL 300 RLRKRTCLAL EAASLIEKGF ECIFNCL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	3e-17	55	109	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-17	55	109	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-17	55	109	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-17	55	109	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00059637001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009133548.1	1e-134	PREDICTED: protein PHOSPHATE STARVATION RESPONSE 1
Refseq	XP_013724349.1	1e-134	protein PHOSPHATE STARVATION RESPONSE 1-like
TrEMBL	A0A078JP45	0.0	A0A078JP45_BRANA; BnaA03g56690D protein
STRING	Bra000270.1-P	1e-178	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM363	28	184

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42660.1	4e-82	G2-like family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]