PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00059754001

Common Name

GSBRNA2T00051253001, GSBRNA2T00059754001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 287aa MW: 33012 Da PI: 5.9262

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00059754001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	160.9	4.8e-50	6	139	1	127
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lppGfrFhPtdeelv +yL+++ eg ++el e+i+ +d+yk++Pw+Lp k + +++ ew+fF++rd+ky++g+r nratksgyWkatgk GSBRNA2T00059754001 6 LPPGFRFHPTDEELVGYYLHRRNEGLEIEL-EIIPLMDLYKFDPWELPeKsFLPNRDMEWFFFCHRDRKYQNGSRINRATKSGYWKATGK 94 79**************************.99**********95334556888**************************** PP NAM 89 dkevlsk......kgelvglkktLvfykgrapkgektdWvmheyr 127 d++++++ +++ +g++ktLvfy grap g +t+W mheyr GSBRNA2T00059754001 95 DRKIVCQssssssTSSIIGCRKTLVFYLGRAPFGGRTEWAMHEYR 139 **96666555555*************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.93E-57	3	164	IPR003441	NAC domain
PROSITE profile	PS51005	54.957	6	164	IPR003441	NAC domain
Pfam	PF02365	3.4E-27	7	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MARSYLPPGF RFHPTDEELV GYYLHRRNEG LEIELEIIPL MDLYKFDPWE LPEKSFLPNR 60 DMEWFFFCHR DRKYQNGSRI NRATKSGYWK ATGKDRKIVC QSSSSSSTSS IIGCRKTLVF 120 YLGRAPFGGR TEWAMHEYRR FDNDTSQGSL NFKGDFALCR VVKRNHEVTL KKCETSSLEV 180 PVPDEPLTNN VDIPCEARYI GKGSCDASNT LRASPDFILG SSTKGHSQSQ TEDDSGFQQF 240 SLPEIGYPPE FFADLNFDWG MENPFPFVQY QEAHVNNEVI NYDVLR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-48	6	165	17	166	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-48	6	165	17	166	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-48	6	165	17	166	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-48	6	165	17	166	NO APICAL MERISTEM PROTEIN
3swm_A	4e-48	6	165	20	169	NAC domain-containing protein 19
3swm_B	4e-48	6	165	20	169	NAC domain-containing protein 19
3swm_C	4e-48	6	165	20	169	NAC domain-containing protein 19
3swm_D	4e-48	6	165	20	169	NAC domain-containing protein 19
3swp_A	4e-48	6	165	20	169	NAC domain-containing protein 19
3swp_B	4e-48	6	165	20	169	NAC domain-containing protein 19
3swp_C	4e-48	6	165	20	169	NAC domain-containing protein 19
3swp_D	4e-48	6	165	20	169	NAC domain-containing protein 19
4dul_A	4e-48	6	165	17	166	NAC domain-containing protein 19
4dul_B	4e-48	6	165	17	166	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the promoters of XTH19 and XTH20 to induce their expression via auxin signaling. XTH19 and XTH20 are involved in cell proliferation in the tissue reunion process of incised stems (PubMed:25182467). Involved in hypocotyl graft union formation. Required for the auxin- mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:27986917). {ECO:0000269\|PubMed:21911380, ECO:0000269\|PubMed:25182467, ECO:0000269\|PubMed:27986917}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00059754001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by wounding in the flowering stem. {ECO:0000269\|PubMed:21911380}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP002684	1e-100	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBank	F5D14	1e-100	AC007767.3 Sequence of BAC F5D14 from Arabidopsis thaliana chromosome 1, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013715081.1	0.0	NAC domain-containing protein 71-like
Swissprot	O49697	3e-86	NAC71_ARATH; NAC domain-containing protein 71
TrEMBL	A0A078JLA5	0.0	A0A078JLA5_BRANA; BnaA08g29850D protein
STRING	Bra035488.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15029	17	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32510.1	1e-148	NAC domain containing protein 11

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Asahina M,Satoh S Molecular and physiological mechanisms regulating tissue reunion in incised plant tissues. J. Plant Res., 2015. 128(3): p. 381-8 [PMID:25736731] Matsuoka K, et al. Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls. Plant Cell Physiol., 2016. 57(12): p. 2620-2631 [PMID:27986917]