PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00059946001

Common Name

GSBRNA2T00059946001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 225aa MW: 25544.6 Da PI: 5.3889

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00059946001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.7	2.4e-09	115	162	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN+++ L++l+P + k + a +Le ++Y++sLq GSBRNA2T00059946001 115 SHSLAERVRREKINERLKCLQDLVPGC----YKTMGMAVMLEVIIDYVRSLQ 162 8***********************9....355999***********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.14E-16	109	178	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.01E-11	109	166	No hit	No description
PROSITE profile	PS50888	15.612	111	161	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.9E-16	111	173	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.1E-6	115	162	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.8E-9	117	167	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MARYEPYNYN IGLNPSLPHI NQNQELINLD LPVSATPSSF MLFSNGDLVD ARHNNSHFSP 60 NLLHGDFGRQ DKKEESGSKR KRKRSEEEES INEDDIEKPR DVVHVRAKRG QATDSHSLAE 120 RVRREKINER LKCLQDLVPG CYKTMGMAVM LEVIIDYVRS LQNQIEFLSM KLSAASAYYD 180 LNSLDIEPTD TFQGGNMYSA EEMERILREG VGTQTPNFSS TLPF*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00059946001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK175757	0.0	AK175757.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor (bHLH075), complete cds, clone: RAFL22-31-M12.
GenBank	AY088885	0.0	AY088885.1 Arabidopsis thaliana clone 98716 mRNA, complete sequence.
GenBank	DQ446289	0.0	DQ446289.1 Arabidopsis thaliana clone pENTR221-At1g25330 basic helix-loop-helix family protein (At1g25330) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009109880.1	1e-163	PREDICTED: transcription factor bHLH75
Swissprot	A4D998	1e-126	BH075_ARATH; Transcription factor bHLH75
TrEMBL	A0A078HE87	1e-166	A0A078HE87_BRANA; BnaA08g19410D protein
TrEMBL	A0A397YL42	1e-166	A0A397YL42_BRACM; Uncharacterized protein
STRING	Bra010993.1-P	1e-163	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14081	20	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25330.1	1e-119	bHLH family protein

Publications ? help Back to Top
Khan M, et al. Interplay between phosphorylation and SUMOylation events determines CESTA protein fate in brassinosteroid signalling. Nat Commun, 2014. 5: p. 4687 [PMID:25134617] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Eremina M, et al. Brassinosteroids participate in the control of basal and acquired freezing tolerance of plants. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(40): p. E5982-E5991 [PMID:27655893] Pfannebecker KC,Lange M,Rupp O,Becker A Seed Plant-Specific Gene Lineages Involved in Carpel Development. Mol. Biol. Evol., 2017. 34(4): p. 925-942 [PMID:28087776]