PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00060034001
Common NameGSBRNA2T00060034001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family CO-like
Protein Properties Length: 291aa    MW: 31417.4 Da    PI: 8.0464
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00060034001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box28.43.5e-09445439
             zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                         r C+ + +  ++lfC+ +  +lC +C  ++H+       H++
  GSBRNA2T00060034001  4 RPCDSCRSAAATLFCRADAAFLCGECDGKIHSAnklasrHER 45
                         68*****************************65677777775 PP
2zf-B_box26.71.1e-084691342
             zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                          + C+ +e+ +++  C+ +   lC +C   +H+       H++vp+
  GSBRNA2T00060034001 46 VWLCQVCEQSPAHVTCKADAAALCVTCDRDIHSAnplsrrHERVPV 91
                         689*****************************66899999*99986 PP
3CCT68.91.3e-23225268144
                  CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                          Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae RpR+KGrF+k++
  GSBRNA2T00060034001 225 REARVLRYREKRKNRKFEKTIRYASRKAYAEVRPRIKGRFAKRT 268
                          9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.352148IPR000315B-box-type zinc finger
SMARTSM003364.7E-15148IPR000315B-box-type zinc finger
CDDcd000219.80E-9448No hitNo description
PfamPF006432.2E-7446IPR000315B-box-type zinc finger
PROSITE profilePS5011910.8654491IPR000315B-box-type zinc finger
PfamPF006435.2E-74691IPR000315B-box-type zinc finger
CDDcd000211.25E-84791No hitNo description
SMARTSM003361.6E-104991IPR000315B-box-type zinc finger
PROSITE profilePS5101716.618225267IPR010402CCT domain
PfamPF062032.0E-17225267IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010099Biological Processregulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MASRPCDSCR SAAATLFCRA DAAFLCGECD GKIHSANKLA SRHERVWLCQ VCEQSPAHVT  60
CKADAAALCV TCDRDIHSAN PLSRRHERVP VTPFYDAPSA QGGSMEAASW LLPNSSVKEG  120
VVEIPNLFAD LDYSAVVDPK MEASENSSGN DGVVPVQTKA LFLSEDYFSF DISASKTTFP  180
HGFSCINQTV SSTSLDVPLV PEGGAVAEIS RTAATPAVQL SPAEREARVL RYREKRKNRK  240
FEKTIRYASR KAYAEVRPRI KGRFAKRTDS RVNDGGDGGV YGGFGVVPSF *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.83677e-54flower| leaf| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00060034001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0526900.0AF052690.1 Raphanus sativus CONSTANS-like 1 protein (COL1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013631409.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 3
RefseqXP_013687100.10.0zinc finger protein CONSTANS-LIKE 3
SwissprotQ9SK531e-144COL3_ARATH; Zinc finger protein CONSTANS-LIKE 3
TrEMBLA0A078HEG60.0A0A078HEG6_BRANA; BnaC04g37230D protein
STRINGBo4g156090.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27602765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24790.11e-145CONSTANS-like 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Tripathi P,Carvallo M,Hamilton EE,Preuss S,Kay SA
    Arabidopsis B-BOX32 interacts with CONSTANS-LIKE3 to regulate flowering.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. 172-177
    [PMID:27999181]