PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00060058001
Common NameGSBRNA2T00060058001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 229aa    MW: 26403.2 Da    PI: 10.0061
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00060058001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3711.6e-2239134196
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                          ff +++++++lk+++++lpk+fa ++g+ k   ++++l++e+g+sW++ l+y   r++s+r+++ +GW++F+ an+ k  D++ Fkl+++
  GSBRNA2T00060058001  39 FFMTTVTASNLKRDIVYLPKTFAMSNGLLK--RFEIVLMNEEGESWKIGLTYescRGRSNRFYMNRGWRSFCVANKKKPEDMFKFKLVQN 126
                          788899********************9995..579*****************999999999**************************995 PP

                          SEE..EEEE CS
                   B3  88 sefelvvkv 96 
                           e+++v+++
  GSBRNA2T00060058001 127 -EETPVIHL 134
                          .55588876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.6E-2134132IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-2035135IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.0E-2539138IPR003340B3 DNA binding domain
CDDcd100173.04E-1839136No hitNo description
PROSITE profilePS5086314.36739138IPR003340B3 DNA binding domain
PfamPF023621.5E-2039135IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MEDIAMKKRT KRNLCNTEKV SRKKKSPKAE TDPSTDQSFF MTTVTASNLK RDIVYLPKTF  60
AMSNGLLKRF EIVLMNEEGE SWKIGLTYES CRGRSNRFYM NRGWRSFCVA NKKKPEDMFK  120
FKLVQNEETP VIHLLPLNSE YLHKVEPSDE CDTRQGLEAT EKEFLGVETN RNDTSQSKEA  180
IKIRTRSKAT IKEENITTSQ NRFVTLTATP TAHSTQFPLW ARSMKPEI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1624KKRTKRNLCNTEKVSRKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00060058001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002880610.16e-62B3 domain-containing protein REM10 isoform X3
RefseqXP_020885717.11e-61B3 domain-containing protein REM10 isoform X1
RefseqXP_020885718.11e-61B3 domain-containing protein REM10 isoform X2
SwissprotP0DH854e-56REM10_ARATH; B3 domain-containing protein REM10
TrEMBLA0A078HEH31e-169A0A078HEH3_BRANA; BnaC04g37070D protein
STRINGfgenesh1_pg.C_scaffold_40003922e-61(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM144901522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.12e-58B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]