PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00060239001
Common NameGSBRNA2T00060239001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 240aa    MW: 25764.2 Da    PI: 11.7431
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00060239001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like802.9e-255499955
              G2-like  9 eLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                          LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl
  GSBRNA2T00060239001 54 SLHKRFVDAVAHL-GIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL 99
                         7************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.0E-2454104IPR009057Homeodomain-like
TIGRFAMsTIGR015577.6E-205499IPR006447Myb domain, plants
SuperFamilySSF466894.84E-1455103IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MGRRASITRG THPLISIPHL SRSRSRLRHQ TPQQLRPTSP PPPPPPIHSP AAASLHKRFV  60
DAVAHLGIKN AVPKTIMQLM SVDGLTRENV ASHLQKYRLY LKRMQGLSSG GGGGSDPATD  120
RLFASSPVPA HFLHPNRVPS SDHFMPSFVP IATLQQQQQM AAVAAAAAAA ATTGQFGSPP  180
ANGKFDQSFL ARQTQQQQTL QRMSTPSLHS PVGNYIEDLE SANANGGRTV LTLFPTRDD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A1e-23551021057Transcription factor LUX
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00060239001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009122638.11e-93PREDICTED: transcription factor PCL1-like
TrEMBLA0A078HHH01e-171A0A078HHH0_BRANA; BnaA01g31450D protein
STRINGBo1g141480.11e-110(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15492791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10760.11e-80G2-like family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]