PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00060260001
Common NameGSBRNA2T00060260001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 292aa    MW: 32328.9 Da    PI: 4.7226
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00060260001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.81.3e-1872122155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          + ++GVr++  +g+WvAeIr+p   + r  r +lg+f taeeAa a+++a+k ++g
  GSBRNA2T00060260001  72 CSFRGVRQRV-WGKWVAEIREP---N-RvSRLWLGTFPTAEEAASAYDEAAKVMYG 122
                          579*****99.**********8...2.58***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.48E-3072132No hitNo description
PfamPF008471.0E-1272122IPR001471AP2/ERF domain
PROSITE profilePS5103221.69473130IPR001471AP2/ERF domain
SMARTSM003808.7E-3573136IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-3073131IPR001471AP2/ERF domain
PRINTSPR003675.4E-107485IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-2074131IPR016177DNA-binding domain
PRINTSPR003675.4E-1096112IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MAIYEQTGIN TSSKKRKSRA RADGTTVADR LKKWKEYNVI ADASSTKKRK VPAKGSKKGC  60
MKGKGGPENT HCSFRGVRQR VWGKWVAEIR EPNRVSRLWL GTFPTAEEAA SAYDEAAKVM  120
YGPLARLNFP QQCVVASEFL ASTSSQSEVC SSVEHKPVLG GDAGSESRQV SQIRDNNIRM  180
SSDLLDEFDG EYWGRVSKEI EKPKEGEEEV LTVADYGWSN DMLNEQDLWD PNEVFDVDEL  240
LGDIDECIML TGTGVDGDQN GINPGGYDSH IPLQLEPHDG HEFFDLSSQD L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-16711371279Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed preferentially in roots and stems, and at a lower level in leaves. {ECO:0000269|PubMed:10809011}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269|PubMed:11798174}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00060260001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt and drought stresses. {ECO:0000269|PubMed:10809011, ECO:0000269|PubMed:9707537}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009122438.10.0PREDICTED: dehydration-responsive element-binding protein 2B-like
SwissprotO821332e-99DRE2B_ARATH; Dehydration-responsive element-binding protein 2B
TrEMBLA0A078HFU80.0A0A078HFU8_BRANA; BnaA01g31290D protein
STRINGBra034159.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28741765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11020.17e-84DRE/CRT-binding protein 2B
Publications ? help Back to Top
  1. Djafi N, et al.
    The Arabidopsis DREB2 genetic pathway is constitutively repressed by basal phosphoinositide-dependent phospholipase C coupled to diacylglycerol kinase.
    Front Plant Sci, 2013. 4: p. 307
    [PMID:23964284]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kim K, et al.
    Alleviation of salt stress by enterobacter sp. EJ01 in tomato and Arabidopsis is accompanied by up-regulation of conserved salinity responsive factors in plants.
    Mol. Cells, 2014. 37(2): p. 109-17
    [PMID:24598995]
  4. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  5. Miyazaki Y,Abe H,Takase T,Kobayashi M,Kiyosue T
    Overexpression of LOV KELCH protein 2 confers dehydration tolerance and is associated with enhanced expression of dehydration-inducible genes in Arabidopsis thaliana.
    Plant Cell Rep., 2015. 34(5): p. 843-52
    [PMID:25627253]
  6. Lee SY,Boon NJ,Webb AA,Tanaka RJ
    Synergistic Activation of RD29A Via Integration of Salinity Stress and Abscisic Acid in Arabidopsis thaliana.
    Plant Cell Physiol., 2016. 57(10): p. 2147-2160
    [PMID:27497445]