PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00060293001
Common NameGSBRNA2T00060293001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 253aa    MW: 28450 Da    PI: 6.6891
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00060293001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix43.58.1e-1424106286
             trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          W+++ + +Liea  ++  +l+rg+l++++W+ev++++      +g  ++ +qCk++++ l+k+yk +k+  +       s++ +f++l+
  GSBRNA2T00060293001  24 WSEDATATLIEAWGDRYVNLSRGNLRQNDWREVADAVnsihGGGGRPKTDVQCKNRIDTLKKKYKTEKAKPSP------SSWCFFERLD 106
                          *************************************99888888999******************9998885......4699999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.1E-2522107No hitNo description
SMARTSM005950.001131113IPR006578MADF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010468Biological Processregulation of gene expression
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
METTPETQSK SHPHRLPPGR EDWWSEDATA TLIEAWGDRY VNLSRGNLRQ NDWREVADAV  60
NSIHGGGGRP KTDVQCKNRI DTLKKKYKTE KAKPSPSSWC FFERLDFLIG PVAAKKSTGV  120
VTPALKNHTL NQTGSKSSGS SLDDDDDDDD DDEVGDWGFV VRKHRRVEEV DPSGGEGSSC  180
RELARAILKL GEVYERMEGA KQRMMVELEK ERMEAAKELE LQRMNMLMDM QMELERSKLG  240
KRRAVAASGK KL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.145210.0seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00060293001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009122379.11e-166PREDICTED: trihelix transcription factor ASIL1-like
TrEMBLA0A078HEW50.0A0A078HEW5_BRANA; BnaA01g31020D protein
STRINGBra034165.1-P1e-164(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49262141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11100.11e-123sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]