PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00060505001
Common NameGSBRNA2T00060505001, LOC106382768, LOC106382769
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HSF
Protein Properties Length: 253aa    MW: 28366.7 Da    PI: 7.7242
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00060505001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind116.81.3e-36161062101
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k+++++ed++++++isw+e+g+sfvv+++++fak++Lpk+Fkh+nf+SFvRQLn+YgFkkv  ++         weF+++ F++g+k
  GSBRNA2T00060505001  16 FLTKTFNLVEDPSTNDVISWNEDGSSFVVWNQTDFAKDLLPKHFKHNNFSSFVRQLNTYGFKKVVPDR---------WEFSNEFFRRGEK 96 
                          9*****************************************************************99.........************* PP

                          XXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkk 101
                          +ll++i+r+k
  GSBRNA2T00060505001  97 RLLRDIQRRK 106
                          ********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.1E-39599IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.5E-5712105IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.01E-3512105IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.9E-3216105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.9E-201639IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.9E-205466IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405579IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.9E-206779IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MATNESQSQR TAPTPFLTKT FNLVEDPSTN DVISWNEDGS SFVVWNQTDF AKDLLPKHFK  60
HNNFSSFVRQ LNTYGFKKVV PDRWEFSNEF FRRGEKRLLR DIQRRKLTPQ AAVSPPRPEV  120
AAAQTAKTAV SPSSSGEVSP SSWTGSGGLS EELLEENERL RSENIQLSRE LAQMKSLYGN  180
IFGLMSNYAG ASSSSHEMMM DIEEEASPRL FGVSIGLKRT RSEGVHVKTV STAAEETPWL  240
RHYNLANQRV CN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-261610529129Heat shock factor protein 1
5d5v_B2e-261610529129Heat shock factor protein 1
5d5v_D2e-261610529129Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.133010.0microspore| seed
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00060505001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013678282.10.0heat stress transcription factor B-2a-like
RefseqXP_013678283.10.0heat stress transcription factor B-2a-like
SwissprotQ9SCW41e-118HFB2A_ARATH; Heat stress transcription factor B-2a
TrEMBLA0A078JI380.0A0A078JI38_BRANA; BnaCnng54110D protein
STRINGBra029291.1-P1e-169(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96528111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.16e-98heat shock transcription factor B2A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]