PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00060837001

Common Name

GSBRNA2T00060837001, GSBRNA2T00062587001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

M-type_MADS

Protein Properties

Length: 275aa MW: 31459 Da PI: 8.2386

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00060837001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	53.2	3.7e-17	10	51	2	43
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 ri n+ r +t+ kR++ ++KKA+E S+LC+++ ++i++++t GSBRNA2T00060837001 10 RIMNEKTRITTYRKRKECLFKKANEFSTLCGVNTCLIVYGPT 51 899*************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	5.5E-16	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	16.063	1	51	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	6.02E-19	2	96	IPR002100	Transcription factor, MADS-box
CDD	cd00266	1.08E-25	2	82	No hit	No description
PRINTS	PR00404	8.3E-7	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.0E-16	10	51	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.3E-7	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.3E-7	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MGRKMVKMAR IMNEKTRITT YRKRKECLFK KANEFSTLCG VNTCLIVYGP TRAGDERIDH 60 PELWPKDERK VREIITKYRD TASSSCIKTY SVQECLEKGK IKLEKEKYCP WDNKLEKCSL 120 NELYATFVTV CNKIQEAANR KQTFPDASWS THRDQLGLIG YNQPCLEQHQ LFPMSSMEQN 180 GFAFLPFLNQ MTSTSNTGEV ASFSNVTEPE MTQAMFYGSC SDGQYAPMVQ KTDYMEPVQW 240 GLGNSMFSNV KPFADYPMRF GQVNDLESSG KTPM*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00060837001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189542	0.0	AC189542.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH004B20, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013623871.1	0.0	PREDICTED: uncharacterized protein LOC106329774
TrEMBL	A0A078HH72	0.0	A0A078HH72_BRANA; BnaA03g11270D protein
TrEMBL	A0A0D3B3B1	0.0	A0A0D3B3B1_BRAOL; Uncharacterized protein
STRING	Bo3g021400.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5948	19	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G55690.1	1e-134	M-type_MADS family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]