PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00061114001

Common Name

GSBRNA2T00061114001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

MYB_related

Protein Properties

Length: 590aa MW: 65857.4 Da PI: 4.3263

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00061114001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.2	4.5e-09	426	468	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 r rW++++ +l++++v+++G++ + + + ++ Rt+ q+k+++ GSBRNA2T00061114001 426 RTRWSKQDTQLFYEGVQEFGSN-LSMVQQLFP-ERTRQQIKLKYK 468 78****************99.*****.********95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF15963	2.4E-26	419	503	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.3E-6	423	468	IPR009057	Homeodomain-like
SMART	SM00717	2.3E-7	425	473	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.39E-9	427	477	IPR009057	Homeodomain-like
CDD	cd00167	3.12E-5	428	468	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 590 aa Download sequence Send to blast
MDLDFDDEPA APAARAGAKF KPRGRPQPKK KQVPLSTSQT TLSTDVAKEK LSTQSEHPVS 60 LEASSAYPSN VSTSETTVPD SGTINQSTMG TISKENVSGG ASVLRACTNL NSEGKRCEDG 120 TEAAPAYPDD PRRQDSATFG DSVTSETDEV IDDQTQRMQT GEVEEECDWN METLDIVQEE 180 CITSAYEQHT GKFQPKPRLL DTVIEEEPES HYSVDDTTGA NQSEFMVNEE SRNDEFNTNT 240 IPEVHKETAA PSVLEQEHHV VSPSNNDTVM GEGETQSNEA ETGADKKGKK KRGRKKKTTT 300 SEEEPNKSAP EKKKKFKHSS RRQKNRTLDK ELLETPDDEI RNLPIRDMLR LVAYRESLEK 360 KEAKGAPVVP PTQESNTNMS EDNHFYSQGF DAEDEFGMEE GENHEAPVVK PDSPVNYQTY 420 MNKTPRTRWS KQDTQLFYEG VQEFGSNLSM VQQLFPERTR QQIKLKYKLE ERKNPLKLND 480 ALSTRSKQLT HYHNVIKKLQ EEAAAAKEGE EEEEEGEEAG EEAETTTDVP ENEEPTKTEE 540 TERAGDVVAG VKESDGGDVE NGVRSDGGDE IDDNEGDDDD FWNSYKSEM*

Sequence ? help Back to Top

Protein Sequence Length: 590 aa Download sequence Send to blast

MDLDFDDEPA APAARAGAKF KPRGRPQPKK KQVPLSTSQT TLSTDVAKEK LSTQSEHPVS  60
LEASSAYPSN VSTSETTVPD SGTINQSTMG TISKENVSGG ASVLRACTNL NSEGKRCEDG  120
TEAAPAYPDD PRRQDSATFG DSVTSETDEV IDDQTQRMQT GEVEEECDWN METLDIVQEE  180
CITSAYEQHT GKFQPKPRLL DTVIEEEPES HYSVDDTTGA NQSEFMVNEE SRNDEFNTNT  240
IPEVHKETAA PSVLEQEHHV VSPSNNDTVM GEGETQSNEA ETGADKKGKK KRGRKKKTTT  300
SEEEPNKSAP EKKKKFKHSS RRQKNRTLDK ELLETPDDEI RNLPIRDMLR LVAYRESLEK  360
KEAKGAPVVP PTQESNTNMS EDNHFYSQGF DAEDEFGMEE GENHEAPVVK PDSPVNYQTY  420
MNKTPRTRWS KQDTQLFYEG VQEFGSNLSM VQQLFPERTR QQIKLKYKLE ERKNPLKLND  480
ALSTRSKQLT HYHNVIKKLQ EEAAAAKEGE EEEEEGEEAG EEAETTTDVP ENEEPTKTEE  540
TERAGDVVAG VKESDGGDVE NGVRSDGGDE IDDNEGDDDD FWNSYKSEM*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	294	314	KKKTTTSEEEPNKSAPEKKKK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.27399	0.0	seed

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00061114001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189545	1e-105	AC189545.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH004J18, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013622789.1	0.0	PREDICTED: glutamic acid-rich protein
Refseq	XP_013698717.1	0.0	glutamic acid-rich protein-like
TrEMBL	A0A078FGI4	0.0	A0A078FGI4_BRANA; BnaC03g60400D protein
STRING	Bo3g149920.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5154	25	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39160.1	0.0	MYB_related family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]