PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00061142001

Common Name

GSBRNA2T00061142001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

WRKY

Protein Properties

Length: 296aa MW: 33784.3 Da PI: 7.828

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00061142001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	102.4	2.6e-32	214	272	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vk++++prsYYrCt+++C+vkk+ver a+dp++v++tYeg+H h+ GSBRNA2T00061142001 214 LDDGYRWRKYGQKVVKNTQHPRSYYRCTQEKCRVKKRVERLADDPRMVITTYEGRHLHS 272 59*******************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.4E-33	199	272	IPR003657	WRKY domain
SuperFamily	SSF118290	2.62E-28	207	273	IPR003657	WRKY domain
PROSITE profile	PS50811	29.505	209	274	IPR003657	WRKY domain
SMART	SM00774	5.4E-37	214	273	IPR003657	WRKY domain
Pfam	PF03106	2.6E-25	215	271	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MGTINQGVSL FDEPQNIINT NNTNTLGFFF SFPNHTLSSS SSPSSLVSPF LGHHSFNSFI 60 HNNSPSFVTH PRDPINPMAN LPETLISISS LASSKQRHDH EGIVNLDQHR LTDISSQRPS 120 LNPWAWSSQA GYEYNKKNNH TSEIDVDHNI DDDGCDGDGG NDDDDHQHHE TRRHKINTSP 180 LGIMSTLKMK KPKTRKKVRE PRFCFKTLSD VDVLDDGYRW RKYGQKVVKN TQHPRSYYRC 240 TQEKCRVKKR VERLADDPRM VITTYEGRHL HSPSNHLDDD PLSSSHHSPL SNFFW*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	6e-25	206	271	9	74	Probable WRKY transcription factor 4
2lex_A	6e-25	206	271	9	74	Probable WRKY transcription factor 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00061142001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM593140	0.0	KM593140.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY32) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009109469.1	1e-167	PREDICTED: probable WRKY transcription factor 13 isoform X1
Swissprot	Q9SVB7	1e-137	WRK13_ARATH; Probable WRKY transcription factor 13
TrEMBL	A0A078FGK1	0.0	A0A078FGK1_BRANA; BnaC03g60600D protein
STRING	Bra010683.1-P	1e-166	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6106	27	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39410.1	1e-101	WRKY DNA-binding protein 13

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]