PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00061146001
Common NameGSBRNA2T00061146001, LOC106396861
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 486aa    MW: 52875.6 Da    PI: 6.9565
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00061146001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.14.5e-114570126
                         --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                         ++++ C+ff+rtG+C yG++C+++H+
  GSBRNA2T00061146001 45 PGERDCQFFLRTGQCGYGNTCRYNHP 70
                         5789*********************9 PP
2zf-CCCH36.29.8e-1291115327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                          ++ C +f++tG CkyG++Ck++H++
  GSBRNA2T00061146001  91 QPDCEYFLKTGACKYGSTCKYHHPK 115
                          789********************96 PP
3zf-CCCH28.13.4e-09136159326
                          S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                          ++ C+++++ G C++G  CkF+H+
  GSBRNA2T00061146001 136 EKSCPYYMQKGMCRFGVACKFHHP 159
                          667********************8 PP
4zf-CCCH35.41.9e-11275299327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                          +++Crff+ tGtCkyGd Ck+ H++
  GSBRNA2T00061146001 275 RAECRFFMNTGTCKYGDDCKYTHPR 299
                          799********************95 PP
5zf-CCCH30.56.2e-10321345227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          + + C +fa  G+CkyG++CkFaH++
  GSBRNA2T00061146001 321 GKPACGNFAS-GFCKYGANCKFAHPM 345
                          7899******.*************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.0E-64471IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.4554472IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-84670IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.14E-54872IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-45069IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-688115IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.89688116IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-991115IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-693116IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-494114IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.11E-6132161IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.901133161IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-4133160IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-6135159IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-7272301IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-7273299IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.187273300IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-9275299IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-7278300IPR000571Zinc finger, CCCH-type
SMARTSM003568.8E-7319345IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.469319346IPR000571Zinc finger, CCCH-type
PfamPF006425.7E-8321345IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.63E-5322345IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-5325343IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MSETQQVQNS TGSIRSSENI EDTFRRMKVN EENMEEQSSQ YPDRPGERDC QFFLRTGQCG  60
YGNTCRYNHP LTHLPQGVFY QRDDLPERIG QPDCEYFLKT GACKYGSTCK YHHPKDRNGA  120
GPVLFNVLGY PMRQGEKSCP YYMQKGMCRF GVACKFHHPH PNPQPHNGSH ATTYGMSSFP  180
SVGFPYGGGL PMMSMPPPTY GVMPPPPANY GAMPTRPQVP HPQAYMPFMV PPPQGWSTYM  240
AGSNPIYNVK TQPDSSSSAS VPVAVTSHQH SVSERAECRF FMNTGTCKYG DDCKYTHPRE  300
RMLPPPPPNL LNPIVLPARP GKPACGNFAS GFCKYGANCK FAHPMPLNPY DGTGLTMPSL  360
PTAYASPFTA HLPSRSDSNA LSNGSKPAAE NHTSETEKQD DKSEVQDPSQ LSGSDSTALS  420
NGNKPAAENE TSETEGTEKS GVQGSSDSAA LSNGNSGAES PSSETKKQED HPSQPDKGKQ  480
ESSDK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.188360.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00061146001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013692818.10.0zinc finger CCCH domain-containing protein 26
SwissprotO487720.0C3H26_ARATH; Zinc finger CCCH domain-containing protein 26
TrEMBLA0A078FGQ40.0A0A078FGQ4_BRANA; BnaC04g11770D protein
STRINGBo4g045440.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23802675
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32930.10.0zinc finger nuclease 2
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]