PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00061818001
Common NameGSBRNA2T00061818001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 156aa    MW: 17105.4 Da    PI: 10.6316
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00061818001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.92.9e-1967125155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpse.ng.kr...krfslgkfgtaeeAakaaiaarkkleg 55 
                          ++++GVr+++ +g+W+AeIr+ +  +g ++    + +lg+f taeeAa a+++a+ +l g
  GSBRNA2T00061818001  67 KKFRGVRQRP-WGKWAAEIRCGKAhGGiRNggpVSLWLGTFETAEEAALAYDKAAIQLIG 125
                          59********.**********77755585578***********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381234.7E-361152IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000189.58E-2467132No hitNo description
SuperFamilySSF541717.85E-1868133IPR016177DNA-binding domain
SMARTSM003802.8E-2768139IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-2568133IPR001471AP2/ERF domain
PfamPF008471.0E-1268125IPR001471AP2/ERF domain
PROSITE profilePS5103219.91568133IPR001471AP2/ERF domain
PRINTSPR003671.5E-106980IPR001471AP2/ERF domain
PRINTSPR003671.5E-1099115IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MKRIVRISFT DVEATDSSSS EDDQTNTESP SRRKGKRFVK EIVIDPSDSA EVRKTRFKIR  60
IPARLKKKFR GVRQRPWGKW AAEIRCGKAH GGIRNGGPVS LWLGTFETAE EAALAYDKAA  120
IQLIGPHAPT NFGPESPAVK QDSDAGASAS FFCKK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-1767132462ATERF1
3gcc_A6e-1767132462ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00061818001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013727248.11e-109ethylene-responsive transcription factor ERF069
SwissprotQ9C9954e-58ERF70_ARATH; Ethylene-responsive transcription factor ERF070
TrEMBLA0A078FDP31e-109A0A078FDP3_BRANA; BnaC07g13400D protein
STRINGBo7g056530.11e-108(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40002359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71130.11e-51ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]