PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00061848001
Common NameGSBRNA2T00061848001, LOC106411337
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 546aa    MW: 60897.6 Da    PI: 5.2998
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00061848001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM154.83.9e-48451711128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          l+pGfrFhPtdeelvv+yLk+k+++kkl++  +i e+d+yk++P++Lp k  +++++++w+fFs+rd+k+ +g r++rat++gyWkatg 
  GSBRNA2T00061848001  45 LAPGFRFHPTDEELVVYYLKRKIRRKKLRV-AAIGETDVYKFDPEELPgKaLHNTGDRQWFFFSPRDRKQ-HGGRSSRATDRGYWKATGV 132
                          579***************************.88***************6434556889**********97.699**************** PP

                  NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          d+ +++ +++ vg kktLvf++grapkge+tdWvmhey+l
  GSBRNA2T00061848001 133 DRIIKC-NSRPVGEKKTLVFHRGRAPKGERTDWVMHEYTL 171
                          *****9.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-5540194IPR003441NAC domain
PROSITE profilePS5100552.86945194IPR003441NAC domain
PfamPF023652.0E-2647171IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010114Biological Processresponse to red light
GO:0010224Biological Processresponse to UV-B
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:1900409Biological Processpositive regulation of cellular response to oxidative stress
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MQSYWNIRSS SQILNLHQQK SLGFFFSSPV METSRGSCRA GDRVLAPGFR FHPTDEELVV  60
YYLKRKIRRK KLRVAAIGET DVYKFDPEEL PGKALHNTGD RQWFFFSPRD RKQHGGRSSR  120
ATDRGYWKAT GVDRIIKCNS RPVGEKKTLV FHRGRAPKGE RTDWVMHEYT LHKEELEKCG  180
DVKDNFVLYK IFKKSGSGPK NGEHYGAPFV EEEWAEEDDE VDEADAVHVP TNQLMVSVCL  240
GSNNNIWADG GLNQSELNEN DIQELMRQVS EETGVNSHVA NNNPVNLAED EYLEIDDLLL  300
PGPEPSYVDK EGSAVLNDND FFDVDSYIGD FDATNPQSVP VGVGLNNGVV QSLPVNTFPV  360
TDQANNNQFQ HQTWKNQDSN WPLRNSYTRK ISSGSWTPEL NNNEVTICKF GEAPGDDASE  420
FINPLTSAKG EEATKDESSQ FSSSVWSFLE SIPASPAFAS ENPIVNLNIV RISSLGGRYR  480
FGSKSTSTNV VIAVNDSEAE SKKSGGYNKK NNHKGFFCLS IIGALCALSW VMMGTMGVSG  540
RSLLW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A9e-444520020174NAC domain-containing protein 19
3swm_B9e-444520020174NAC domain-containing protein 19
3swm_C9e-444520020174NAC domain-containing protein 19
3swm_D9e-444520020174NAC domain-containing protein 19
3swp_A9e-444520020174NAC domain-containing protein 19
3swp_B9e-444520020174NAC domain-containing protein 19
3swp_C9e-444520020174NAC domain-containing protein 19
3swp_D9e-444520020174NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16572KIRRKKLR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.272320.0seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, rosette leaves, shoot apex, stems and flowers. {ECO:0000269|PubMed:17158162}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Involved in oxidative stress tolerance by mediating regulation of mitochondrial retrograde signaling during mitochondrial dysfunction. Interacts directly with the mitochondrial dysfunction DNA consensus motif 5'-CTTGNNNNNCA[AC]G-3', a cis-regulatory elements of several mitochondrial retrograde regulation-induced genes, and triggers increased oxidative stress tolerance. {ECO:0000269|PubMed:24045019}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00176DAPTransfer from AT1G32870Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00061848001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat, salt stress, abscisic acid (ABA) and methyl methanesulfonate (MMS) treatment. {ECO:0000269|PubMed:17158162}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF9747560.0KF974756.1 Brassica napus NAC transcription factor 13-1 (NAC13-1.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013707538.10.0NAC domain-containing protein 13 isoform X1
RefseqXP_013707539.10.0NAC domain-containing protein 13 isoform X2
RefseqXP_013707541.10.0NAC domain-containing protein 13 isoform X4
SwissprotF4IED20.0NAC13_ARATH; NAC domain-containing protein 13
TrEMBLA0A078FDS70.0A0A078FDS7_BRANA; BnaC07g13550D protein
STRINGBo7g057730.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM153171517
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32870.11e-172NAC domain protein 13
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Vermeirssen V,De Clercq I,Van Parys T,Van Breusegem F,Van de Peer Y
    Arabidopsis ensemble reverse-engineered gene regulatory network discloses interconnected transcription factors in oxidative stress.
    Plant Cell, 2014. 26(12): p. 4656-79
    [PMID:25549671]
  3. O'Shea C, et al.
    Structures and Short Linear Motif of Disordered Transcription Factor Regions Provide Clues to the Interactome of the Cellular Hub Protein Radical-induced Cell Death1.
    J. Biol. Chem., 2017. 292(2): p. 512-527
    [PMID:27881680]