PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00061885001
Common NameGSBRNA2T00061885001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 283aa    MW: 32688.9 Da    PI: 7.0123
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00061885001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.12e-15114165155
                          CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +r++h ++Er+RR+++N+ ++ Lr+l+P++   ++++ + a+i+  A++Y+k+L+
  GSBRNA2T00061885001 114 QRMTHIAVERNRRKQMNEYLAVLRSLMPSS---YAQRGDQASIVGGAINYVKKLE 165
                          79****************************...*******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000838.92E-13112169No hitNo description
Gene3DG3DSA:4.10.280.102.7E-14112167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-17113177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.12113164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-12114165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-10119170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MPLEAVVNPQ DPFGYLSNCK DFMFHDFYYQ EEIVSQDTKN NIHKLGHEQR FVENDKEEER  60
QWGDHYHHQC PVVPSLEEEL DLPAIDVENH PPVQQRRKRR RTRSNKNKEE IENQRMTHIA  120
VERNRRKQMN EYLAVLRSLM PSSYAQRGDQ ASIVGGAINY VKKLEHILQS MEPRRTTTTS  180
HEADTSTSSL VFTFSDFFTF PQYSKKSLSE VESSSSPAEI EVTVAEGHAN VKIMAKKKPR  240
QLLKLVASIQ SLRLSLLHLN VTTLDNLILY SISVKNNHEI LE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
194100QRRKRRR
296100RKRRR
396101RKRRRT
4114125RMTHIAVERNRR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00061885001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013663812.10.0transcription factor bHLH94-like isoform X1
RefseqXP_022556164.10.0transcription factor bHLH94-like isoform X2
SwissprotQ9SK911e-143BH094_ARATH; Transcription factor bHLH94
TrEMBLA0A078FK940.0A0A078FK94_BRANA; BnaC07g13680D protein
STRINGBo7g057920.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM111627102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22490.11e-135bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]