PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00061892001

Common Name

GSBRNA2T00061892001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Trihelix

Protein Properties

Length: 343aa MW: 39356.4 Da PI: 8.9674

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00061892001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	43	1.2e-13	179	223	24	68
trihelix 24 gklkkplWeevskkmrergferspkqCkekwenlnkrykkikege 68 + ++k +W+ s+++ erg+++sp+qC++k+++lnk+ kk+++++ GSBRNA2T00061892001 179 ALQRKSKWKFFSEVLFERGYHVSPQQCEDKFNDLNKQLKKLNDNR 223 4599*************************************9976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.5E-9	179	223	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
LVVFPNPNRE NLGKAFRDWD LWGPFFFKPA KSPSRSKPCF FRKFPLAGSV LRQGFCVSGN 60 PERLRSTADS FVQSLEGERD ENFPQEGMVC GGALSYGSFD LQGSMRVHHH NPNSRPLESL 120 PFTVVTAQTC NHNMPLTEQH KGERENNSVS YDHEPSFSEE GGDGDDLSMD GGSRRKFAAL 180 QRKSKWKFFS EVLFERGYHV SPQQCEDKFN DLNKQLKKLN DNRLNLHHDL ALQHSVKLAF 240 RNIDDQENDD FRNHQLERRT NRKNRQHSIS DLFIVLGLLA HQTRTLSHLW QSRIYFATIV 300 IRLTHLGVSP FFSSIMNVLI LSAFGFADVH MVEIFYKALK LK*

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

LVVFPNPNRE NLGKAFRDWD LWGPFFFKPA KSPSRSKPCF FRKFPLAGSV LRQGFCVSGN  60
PERLRSTADS FVQSLEGERD ENFPQEGMVC GGALSYGSFD LQGSMRVHHH NPNSRPLESL  120
PFTVVTAQTC NHNMPLTEQH KGERENNSVS YDHEPSFSEE GGDGDDLSMD GGSRRKFAAL  180
QRKSKWKFFS EVLFERGYHV SPQQCEDKFN DLNKQLKKLN DNRLNLHHDL ALQHSVKLAF  240
RNIDDQENDD FRNHQLERRT NRKNRQHSIS DLFIVLGLLA HQTRTLSHLW QSRIYFATIV  300
IRLTHLGVSP FFSSIMNVLI LSAFGFADVH MVEIFYKALK LK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00061892001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A078FHU7	0.0	A0A078FHU7_BRANA; BnaC07g13720D protein (Fragment)
STRING	Bo5g023990.1	1e-151	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	7e-38	sequence-specific DNA binding transcription factors

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]