PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00062133001
Common NameGSBRNA2T00062133001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 85aa    MW: 9617.64 Da    PI: 9.1291
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00062133001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.25.2e-101560245
                         SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                          +WT+  d+++  a +++ ++   +W  +ar +g g++++++k r+ 
  GSBRNA2T00062133001 15 SSWTAKQDKQFEMALAKFEKDtpdRWQNVARAVG-GKSAEEVKRRYE 60
                         58********************************.**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.3851267IPR017884SANT domain
SMARTSM007175.1E-91365IPR001005SANT/Myb domain
PfamPF002492.1E-81560IPR001005SANT/Myb domain
SuperFamilySSF466895.15E-131571IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.3E-51764IPR009057Homeodomain-like
CDDcd001671.00E-61763No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 85 aa     Download sequence    Send to blast
MASNSIISTS RSSTSSWTAK QDKQFEMALA KFEKDTPDRW QNVARAVGGK SAEEVKRRYE  60
LLVRDVNDIE SGRYDPQPRY CNTN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-23784177RADIALIS
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed just outside the vascular bundles in the rosette stem and the leaf traces. Not detected in floral primordia. {ECO:0000269|PubMed:17672842}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00062133001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013626773.12e-57PREDICTED: protein RADIALIS-like 4
SwissprotQ1G3C43e-35RADL4_ARATH; Protein RADIALIS-like 4
TrEMBLA0A078HGD56e-56A0A078HGD5_BRANA; BnaC03g48330D protein
TrEMBLA0A0D3BEG66e-56A0A0D3BEG6_BRAOL; Uncharacterized protein
STRINGBo3g094110.11e-56(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18328.19e-37RAD-like 4
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]