PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00062653001

Common Name

GSBRNA2T00062653001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

HSF

Protein Properties

Length: 134aa MW: 15247.9 Da PI: 10.8617

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00062653001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	40.9	5.5e-13	5	96	2	96
HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHH...HSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS HSF_DNA-bind 2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpk...yFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 F +ly+i++d++ + +isws ++ n fvv+d +++ +++L k + +n++ F+ +L gF++v + ++ eF+h+ F++g GSBRNA2T00062653001 5 FYIQLYKIVDDRSSDPIISWSkSSPNVFVVWDLKKLRRDILMKssgVLLGRNITEFIAKLRSHGFRSVLKGFGE-------LEFEHDGFTRG 89 899****************6666************886668899******************99.......*******99 PP XXXXXXX CS HSF_DNA-bind 90 kkellek 96 ++ +k GSBRNA2T00062653001 90 LVTKKTK 96 7655544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	1.6E-9	1	94	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	1.9E-11	3	89	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	2.9E-13	3	89	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	8.5E-6	5	28	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	4.0E-10	5	92	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	8.5E-6	60	72	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 134 aa Download sequence Send to blast
MLSSFYIQLY KIVDDRSSDP IISWSKSSPN VFVVWDLKKL RRDILMKSSG VLLGRNITEF 60 IAKLRSHGFR SVLKGFGELE FEHDGFTRGL VTKKTKMVKA LSERFDAQIK AIKCRFKAKK 120 SSSSLKVDIN LFP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00062653001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013745663.1	1e-82	heat stress transcription factor A-4a-like
TrEMBL	A0A078HEM5	2e-90	A0A078HEM5_BRANA; BnaC04g32080D protein
STRING	Bra025611.1-P	6e-76	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3839	14	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77570.1	9e-13	Winged helix-turn-helix transcription repressor DNA-binding

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]