PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00062655001
Common NameGSBRNA2T00062655001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 293aa    MW: 33832 Da    PI: 7.419
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00062655001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF63.32.7e-201765250
                         ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
               SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                         +++++s + +++  R+ +i+KKA+EL +LCd+e++vi ++++g++++++
  GSBRNA2T00062655001 17 SSSSYSLAATSLKSRLLTIFKKAQELTTLCDIEACVIHYGPDGEMRTWP 65
                         799*********************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500668.9282668IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.2E-132899IPR002100Transcription factor, MADS-box
PfamPF003192.3E-103064IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MRSPRSSSCS KCSSSSSSSS YSLAATSLKS RLLTIFKKAQ ELTTLCDIEA CVIHYGPDGE  60
MRTWPENRDI VRSLALRYIQ LDQAKRRKKS VNLYEFLNKN KDNKTMLNKF KKRNVEELKY  120
PISDHYTPDQ INQLIHSLEQ SYSKLQERRR FLAAKANLDD QSCVYDQNNN NYNFQHLCLS  180
DYSTLHYQLM PYGGSDQNMM CMVNNFQHPC VSSNTTDYSV FPLELQESVS NYELNQLMPH  240
ELNYGFDQNM CMADTTNSCN IYPSFSHDFN PVMSSSYVDE NRLLRASTLP YL*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00062655001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013633151.10.0PREDICTED: uncharacterized protein LOC106338804
SwissprotQ9FLL01e-51AGL75_ARATH; Agamous-like MADS-box protein AGL75
TrEMBLA0A078HG720.0A0A078HG72_BRANA; BnaC04g32100D protein
STRINGBo4g139560.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56620126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40120.18e-51AGAMOUS-like 76
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]