PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00062703001
Common NameGSBRNA2T00062703001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 419aa    MW: 45443.5 Da    PI: 8.8765
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00062703001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.69e-0897117526
                          --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                           C+f+ + G Ck Gd+C+F H+
  GSBRNA2T00062703001  97 VCKFWKA-GNCKKGDQCSFLHS 117
                          5******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.1E-689117IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-692118IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.98E-793117IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-597117IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.29597119IPR000571Zinc finger, CCCH-type
SMARTSM003203.0E-4123162IPR001680WD40 repeat
SuperFamilySSF509781.12E-42125171IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.101.0E-36127173IPR015943WD40/YVTN repeat-like-containing domain
PROSITE profilePS5029418.879130334IPR017986WD40-repeat-containing domain
PROSITE profilePS5008213.817130171IPR001680WD40 repeat
PfamPF117151.6E-4145177No hitNo description
PRINTSPR003201.0E-7149163IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780149163IPR019775WD40 repeat, conserved site
SMARTSM00320100202239IPR001680WD40 repeat
SuperFamilySSF509781.12E-42209414IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.101.0E-36233415IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003206.5E-4247285IPR001680WD40 repeat
PfamPF004004.2E-5250285IPR001680WD40 repeat
PROSITE profilePS5008210.375269294IPR001680WD40 repeat
PRINTSPR003201.0E-7272286IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780272286IPR019775WD40 repeat, conserved site
SMARTSM003202.3E-5288325IPR001680WD40 repeat
PfamPF004000.0029290324IPR001680WD40 repeat
PROSITE profilePS500829.172295324IPR001680WD40 repeat
PRINTSPR003201.0E-7312326IPR020472G-protein beta WD-40 repeat
SMARTSM003201.7375412IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MSYKAPRRYS NGRNFGVERQ QDFVADIVPR RPYENKGSNK WSRNLVWTAS GANKPRKNGN  60
TYGSTKPQVS GAGALVSNQQ RKDAAYVQRS SSSKECVCKF WKAGNCKKGD QCSFLHSLTC  120
LPGLVMVAAL EGHKKDLKGI ALPQGSDKLF SAGSDGTLRI WDCHTGQCVH TINLQAEAGS  180
LICEGPWVFL GLPNAVKAFN VQTSKDLHLN GVVGQVRTMT VGNGMLFAGT SSGSISVWKA  240
TDSESDPFTY LTSLKGHHSG EVTCFIVGGH RLYSGSVDRT IKVWDLNTLE CTMTLRHHTD  300
TVTSLLCWDQ YLISSSLDGT IKVWACSENG SLTVTNTRRQ EQSVHTLCGM SDAEGKPIVF  360
CSYENGTVSI CDLPSFEVRG KMFSTNTVGT ITIGPEGLLF TGDKNGKLRV WSLAGTKV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A6e-1913041311323Tako8
6g6n_A6e-1913041311323Tako8
6g6n_B6e-1913041311323Tako8
6g6n_C6e-1913041311323Tako8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00062703001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013632219.10.0PREDICTED: zinc finger CCCH domain-containing protein 59-like
SwissprotQ9FKR90.0C3H59_ARATH; Zinc finger CCCH domain-containing protein 59
TrEMBLA0A078HHG60.0A0A078HHG6_BRANA; BnaC04g32370D protein
STRINGBo4g140020.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40481848
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40880.10.0C3H family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]