PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00062706001
Common NameGSBRNA2T00062706001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 430aa    MW: 46468.5 Da    PI: 9.196
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00062706001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.83.2e-07108128526
                          --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                           C+f+ + G Ck Gd+C+F H+
  GSBRNA2T00062706001 108 VCKFWKA-GNCKKGDQCSFLHS 128
                          5******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.0E-6101128IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.81E-7103128IPR000571Zinc finger, CCCH-type
SMARTSM003564.4E-6103129IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.835108130IPR000571Zinc finger, CCCH-type
PfamPF006427.8E-5108128IPR000571Zinc finger, CCCH-type
SuperFamilySSF509781.46E-42129182IPR017986WD40-repeat-containing domain
SMARTSM003201.7E-4134173IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.101.8E-42136424IPR015943WD40/YVTN repeat-like-containing domain
PROSITE profilePS5029419.406141345IPR017986WD40-repeat-containing domain
PROSITE profilePS5008213.984141182IPR001680WD40 repeat
PfamPF117151.1E-5156188No hitNo description
PROSITE patternPS006780160174IPR019775WD40 repeat, conserved site
PRINTSPR003205.3E-8160174IPR020472G-protein beta WD-40 repeat
SMARTSM0032085213250IPR001680WD40 repeat
SuperFamilySSF509781.46E-42220425IPR017986WD40-repeat-containing domain
SMARTSM003205.9E-4258296IPR001680WD40 repeat
PfamPF004003.0E-5262296IPR001680WD40 repeat
PROSITE profilePS5008210.542280305IPR001680WD40 repeat
PROSITE patternPS006780283297IPR019775WD40 repeat, conserved site
PRINTSPR003205.3E-8283297IPR020472G-protein beta WD-40 repeat
SMARTSM003203.9E-5299336IPR001680WD40 repeat
PfamPF004000.0049301335IPR001680WD40 repeat
PROSITE profilePS500828.971306335IPR001680WD40 repeat
PRINTSPR003205.3E-8323337IPR020472G-protein beta WD-40 repeat
SMARTSM003201.3386423IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MSYKAPRRYS NGRKFGVERQ QDFAADIAPR RPYENKGPNK WSRNLVWTAS DANKPRKNGN  60
TYGSTKSQVS GTAASVSQQR KNAGYGQVSD TRGWGSSNRG SPKSKECVCK FWKAGNCKKG  120
DQCSFLHSWS CLPGLVMVAA LEGHKKDLKG IALPQGSDKL FSASSDGTLR IWDCHTGQCV  180
HTINLQAEAG SLICEGPWVF LGLPNAVKAF NVQTSKDLHL NGAVGQVHAI TVGNGMLFAG  240
TSSGSISVWK ATDSKSDPFT YLTSLEGHHS SEVTCFIVGG QRLYSGSVDR TIKVWDLNTL  300
ECTMTLRQHT GAVTSLLCWD QYLISSSLDG SIKVWACSDS GSLKVTNTRR QEQSVHTLCG  360
MSDAEGKPIM FCSYQNGTVS ICDLPSFEER GKMFSTNTVG AITVGPEGLL FTGDKSGKLR  420
VWNLAGTKV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A4e-1814042410323Tako8
6g6n_A4e-1814042410323Tako8
6g6n_B4e-1814042410323Tako8
6g6n_C4e-1814042410323Tako8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00062706001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018513957.10.0PREDICTED: zinc finger CCCH domain-containing protein 59 isoform X2
SwissprotQ9FKR90.0C3H59_ARATH; Zinc finger CCCH domain-containing protein 59
TrEMBLA0A078HGG20.0A0A078HGG2_BRANA; BnaC04g32390D protein
STRINGBra025586.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40481848
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40880.10.0C3H family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]