PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00062707001
Common NameGSBRNA2T00062707001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 232aa    MW: 25506 Da    PI: 10.1573
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00062707001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.31.1e-07113133526
                          --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                           C+f+ + G Ck Gd+C+F H+
  GSBRNA2T00062707001 113 VCKFWKA-GNCKKGDQCSFLHS 133
                          5******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.8E-6106133IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-7108133IPR000571Zinc finger, CCCH-type
SMARTSM003564.4E-6108134IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.751113135IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-5113133IPR000571Zinc finger, CCCH-type
SMARTSM003203.0E-4139178IPR001680WD40 repeat
SuperFamilySSF509783.48E-9141189IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.102.8E-10143189IPR015943WD40/YVTN repeat-like-containing domain
PROSITE profilePS5008213.817146187IPR001680WD40 repeat
PROSITE profilePS5029412.763146187IPR017986WD40-repeat-containing domain
PfamPF117159.0E-5161193No hitNo description
PROSITE patternPS006780165179IPR019775WD40 repeat, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MSYKAPRRYS NGRKFGVERQ QDFAADIAPR RPYENKGPNK WSRNLVWTAS DANKPRKNGN  60
TYMSTKPQVS GAGALVSNKQ RKDSAYVQRS SSVSDTRGWG SNDKGSPKSK ECVCKFWKAG  120
NCKKGDQCSF LHSWTCLPGL VMVAALEGHK KDLKGIALPQ GSDKLFSAGS DGTLRIWDCH  180
TGQCVHTINL QAEAGSLICE GPWVFLGLPN AVKVSLRNLI YFCSYASRLY S*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00062707001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013632219.11e-146PREDICTED: zinc finger CCCH domain-containing protein 59-like
SwissprotQ9FKR92e-98C3H59_ARATH; Zinc finger CCCH domain-containing protein 59
TrEMBLA0A078HGA21e-172A0A078HGA2_BRANA; BnaC04g32400D protein
STRINGBo4g140040.11e-157(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40481848
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40880.11e-101C3H family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]