PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00062787001
Common NameGSBRNA2T00062787001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 151aa    MW: 17171.2 Da    PI: 6.8913
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00062787001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.43.1e-1934109184
                          EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                          f+kvltpsdv+k++rlv+pk++ae++            led ++g + +++ +  k s++yv+tkGW +Fvk+ +L++gD+v F++
  GSBRNA2T00062787001  34 FDKVLTPSDVGKLNRLVIPKQHAENYfP----------LEDnQTGTVLDFEDRTGKISQSYVMTKGWCRFVKEMKLESGDIVSFHR 109
                          89*********************99952..........3332667777777777889999************************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.4E-2431116IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.09E-2032109IPR015300DNA-binding pseudobarrel domain
CDDcd100172.15E-1832109No hitNo description
PfamPF023629.3E-1734109IPR003340B3 DNA binding domain
SMARTSM010191.2E-834124IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MSTTRTTPVQ EPTETGASGS GNNNFNSAVG EHMFDKVLTP SDVGKLNRLV IPKQHAENYF  60
PLEDNQTGTV LDFEDRTGKI SQSYVMTKGW CRFVKEMKLE SGDIVSFHRG YVPDDNEPEK  120
RKNIFFIDWR HRANTNLVHN INYHHYPLLG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-37311325113B3 domain-containing transcription factor NGA1
5os9_B2e-37311325113B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA1, NGA2 and NGA3. {ECO:0000269|PubMed:16603651}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00062787001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018475147.14e-86PREDICTED: B3 domain-containing transcription factor NGA4-like
RefseqXP_018475148.14e-86PREDICTED: B3 domain-containing transcription factor NGA4-like
SwissprotO825952e-61NGA4_ARATH; B3 domain-containing transcription factor NGA4
TrEMBLA0A078JIH11e-109A0A078JIH1_BRANA; BnaC03g71880D protein
TrEMBLA0A0D3B3K51e-109A0A0D3B3K5_BRAOL; Uncharacterized protein
STRINGBo3g022340.11e-110(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136511527
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01500.11e-61B3 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  3. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]