PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00063230001
Common NameGSBRNA2T00063230001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 282aa    MW: 32107.7 Da    PI: 8.4081
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00063230001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.84e-05426123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ykC  C ksF + s L  H+r+H
  GSBRNA2T00063230001  4 YKCRFCFKSFINGSALGGHMRSH 26
                         9*********************9 PP
2zf-C2H214.97.6e-05168190123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kC+ Cgk F++   L  H  +H
  GSBRNA2T00063230001 168 FKCETCGKAFKSYQALGGHRASH 190
                          89***********9999998887 PP
3zf-C2H213.20.00028216238123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++Cp+C ++Fs+   L  H r+H
  GSBRNA2T00063230001 216 HQCPICFRVFSSGQALGGHKRSH 238
                          79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.34E-10326No hitNo description
PfamPF139126.8E-4327IPR007087Zinc finger, C2H2
SMARTSM003550.028426IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.5E-4426IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.408426IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576675.34E-10163190No hitNo description
PfamPF139122.6E-11167192IPR007087Zinc finger, C2H2
SMARTSM003550.026168190IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.9E-4168196IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.967168195IPR007087Zinc finger, C2H2
PROSITE patternPS000280170190IPR007087Zinc finger, C2H2
SMARTSM003550.081216238IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.141216238IPR007087Zinc finger, C2H2
PfamPF139122.0E-10216238IPR007087Zinc finger, C2H2
PROSITE patternPS000280218238IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MERYKCRFCF KSFINGSALG GHMRSHMLTL SSSKREERPS QLSEETESDA SSSSSSDGDK  60
EEMEFGFSES ETESSRINPT RKRSKRTRKL GSFGFEFKKL KTSQLGETEH HHSSASDTTT  120
EEDLAFCLIM LSRDKWKQHN KTKQTLVEEE DESDHECKNR GRGGRGRFKC ETCGKAFKSY  180
QALGGHRASH RKNKTFTKTE HEEKTEYSVY EEKKIHQCPI CFRVFSSGQA LGGHKRSHGI  240
NNIVSGRVPK EEVSVKQRMI DLNLPAPNED VETSMVVFDE R*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00063230001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009142317.10.0PREDICTED: zinc finger protein ZAT4-like
SwissprotQ9SHD01e-105ZAT4_ARATH; Zinc finger protein ZAT4
TrEMBLA0A078HGQ80.0A0A078HGQ8_BRANA; BnaA04g26050D protein
TrEMBLM4FGU70.0M4FGU7_BRARP; Uncharacterized protein
STRINGBra040325.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14652893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.13e-88C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]