PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00063245001
Common NameGSBRNA2T00063245001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 179aa    MW: 19957.1 Da    PI: 8.7259
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00063245001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.45.5e-39281281100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                          +C aCk+lrrkC+++Cv+apyf aeq +++fa++hk+FGasn +k+l +lp ++r da+++l yeA ar+rdPvyG+vg++++lq+q+++
  GSBRNA2T00063245001  28 PCGACKFLRRKCVRGCVFAPYFDAEQgTASFAAIHKVFGASNTSKMLLRLPLHKRLDAVATLGYEALARVRDPVYGCVGHLFSLQHQVMN 117
                          7***********************9988************************************************************** PP

               DUF260  90 lkaelallkee 100
                          l+ae+a+++++
  GSBRNA2T00063245001 118 LQAEIAHVQAR 128
                          ******99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.32927129IPR004883Lateral organ boundaries, LOB
PfamPF031952.8E-3728126IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MTILVHRLRY MMTTNLNGGG RGGGGEGPCG ACKFLRRKCV RGCVFAPYFD AEQGTASFAA  60
IHKVFGASNT SKMLLRLPLH KRLDAVATLG YEALARVRDP VYGCVGHLFS LQHQVMNLQA  120
EIAHVQARLS MFQRFYLVPP QQMQQPPFDL AYNNEYPMEP TNLDVGWEEE QLPQAVRL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-37241267110LOB family transfactor Ramosa2.1
5ly0_B1e-37241267110LOB family transfactor Ramosa2.1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11824GGRGGGG
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in shoots, roots and floral tissues, but not in stems or leaves. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00063245001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894981e-105AC189498.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB086L12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009142333.11e-123PREDICTED: LOB domain-containing protein 19-like
SwissprotO221323e-82LBD19_ARATH; LOB domain-containing protein 19
TrEMBLA0A078HJM81e-130A0A078HJM8_BRANA; BnaA04g26160D protein
TrEMBLA0A3P6DAJ01e-130A0A3P6DAJ0_BRACM; Uncharacterized protein
STRINGBra040312.1-P1e-122(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45410.13e-85LOB domain-containing protein 19
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]